SCOPe 2.07: Domain d5ldob_: 5ldo B:

Lineage for d5ldob_ (5ldo B:)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.61: LigT-like [55143] (1 superfamily)
   duplication of beta-alpha-beta-alpha-beta motif: antiparallel beta sheet forms barrel (n=6, S=8) similar to the barrel of prokaryotic DNA topoisomerases I and III

4. Superfamily d.61.1: LigT-like [55144] (5 families)

5. Family d.61.1.0: automated matches [191492] (1 protein)
   not a true family

6. Protein automated matches [190796] (6 species)
   not a true protein

7. Species Escherichia coli [TaxId:469008] [328566] (7 PDB entries)

8. Domain d5ldob_: 5ldo B: [328625]
   automated match to d4qakb_
   complexed with 3am

Details for d5ldob_

PDB Entry: 5ldo, 2.75 Å

PDB Description: crystal structure of e.coli ligt complexed with 3'-amp

PDB Compounds: (B:) RNA 2',3'-cyclic phosphodiesterase

SCOPe Domain Sequences for d5ldob_:

Sequence, based on SEQRES records:

>d5ldob_ d.61.1.0 (B:) automated matches {Escherichia coli [TaxId: 469008]}
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfqsnrpf
hphitllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

Sequence, based on observed residues (ATOM records):

>d5ldob_ d.61.1.0 (B:) automated matches {Escherichia coli [TaxId: 469008]}
epqrlffaidlpaeireqiihwrakhfppeagrpvaadnlhltlaflgevsaekekalsl
lagrirqpgftltlddagqwlrsrvvwlgmrqpprgliqlanmlrsqaarsgcfpfhphi
tllrdaseavtipppgfnwsyavteftlyassfargrtrytplkrwaltq

Timeline for d5ldob_:

• d5ldob_ first appeared in SCOPe 2.06
  
• d5ldob_ appears in the current release, SCOPe 2.08