SCOPe 2.08: Domain d5gjsa1: 5gjs A:11-333

Lineage for d5gjsa1 (5gjs A:11-333)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.19: Viral protein domain [49817] (1 superfamily)
   sandwich; 9 strands in 2 sheets; jelly-roll; form trimers

4. Superfamily b.19.1: Viral protein domain [49818] (4 families)
   forms homotrimers

5. Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)

6. Protein Hemagglutinin [49824] (22 species)
   includes rudiment esterase domain

7. Species Influenza A virus, different strains [TaxId:11320] [49825] (131 PDB entries)

8. Domain d5gjsa1: 5gjs A:11-333 [326960]
   Other proteins in same PDB: d5gjsa2, d5gjsb_, d5gjsh1, d5gjsh2, d5gjsl1, d5gjsl2
   automated match to d3ztna_
   complexed with nag

Details for d5gjsa1

PDB Entry: 5gjs, 2.9 Å

PDB Description: crystal structure of h1 hemagglutinin from a/california/04/2009 in complex with a neutralizing antibody 3e1

PDB Compounds: (A:) Hemagglutinin

SCOPe Domain Sequences for d5gjsa1:

Sequence, based on SEQRES records:

>d5gjsa1 b.19.1.2 (A:11-333) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpeceslstasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpkt
sswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgih
hpstsadqqslyqnadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdki
tfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpiti
gkcpkyvkstklrlatglrnips

Sequence, based on observed residues (ATOM records):

>d5gjsa1 b.19.1.2 (A:11-333) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpecestasswsyivetpssdngtcypgdfidyeelreqlssvssferfeifpktss
wpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgihhp
stsadqqslynadtyvfvcssryskkfkpeiaicpkvrdqegrmnyywtlvepgdkitfe
atgnlvvpryafamernasgiiisdtpvhdcnttcqtpkgaintslpfqnihpitigkcp
kyvkstklrlatglrnips

Timeline for d5gjsa1:

• d5gjsa1 first appeared in SCOPe 2.06
  
• d5gjsa1 appears in SCOPe 2.07