SCOPe 2.07: Domain d5tpab_: 5tpa B:

Lineage for d5tpab_ (5tpa B:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (45 proteins)

6. Protein N-methyl-D-aspartate receptor subunit 1 [89787] (3 species)

7. Species Human (Homo sapiens) [TaxId:9606] [314718] (10 PDB entries)

8. Domain d5tpab_: 5tpa B: [326840]
   Other proteins in same PDB: d5tpaa_
   automated match to d5i2kb_
   complexed with 7h2, glu, gly

Details for d5tpab_

PDB Entry: 5tpa, 2.48 Å

PDB Description: structure of the human glun1/glun2a lbd in complex with compound 9 (gne3500)

PDB Compounds: (B:) Glutamate receptor ionotropic, NMDA 1

SCOPe Domain Sequences for d5tpab_:

Sequence, based on SEQRES records:

>d5tpab_ c.94.1.1 (B:) N-methyl-D-aspartate receptor subunit 1 {Human (Homo sapiens) [TaxId: 9606]}
mstrlkivtihqepfvyvkptlsdgtckeeftvngdpvkkvictgpndtspgsprhtvpq
ccygfcidlliklartmnftyevhlvadgkfgtqervnnsnkkewngmmgellsgqadmi
vapltinneraqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqssv
diyfrrqvelstmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvtt
gelffrsgfgigmrkdspwkqnvslsilkshengfmedldktwvryqec

Sequence, based on observed residues (ATOM records):

>d5tpab_ c.94.1.1 (B:) N-methyl-D-aspartate receptor subunit 1 {Human (Homo sapiens) [TaxId: 9606]}
mstrlkivtihqepfvyvkptlsdgtckeeftdpvkkvictgpndtspgsprhtvpqccy
gfcidlliklartmnftyevhlvadgkfgtqervkkewngmmgellsgqadmivapltin
neraqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqssvdiyfrrq
velstmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvttgelffrs
gfgigmrkdspwkqnvslsilkshengfmedldktwvrc

Timeline for d5tpab_:

• d5tpab_ first appeared in SCOPe 2.06
  
• d5tpab_ appears in the current release, SCOPe 2.08