SCOPe 2.06: Domain d5trwa_: 5trw A:

Lineage for d5trwa_ (5trw A:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.1: Ribokinase-like [53613] (6 families)
   has extra strand located between strands 2 and 3

5. Family c.72.1.5: PfkB-like kinase [82515] (3 proteins)
   includes a variety of carbohydrate and pyrimidine kinases

6. Protein automated matches [190479] (3 species)
   not a true protein

7. Species Burkholderia xenovorans [TaxId:266265] [326107] (1 PDB entry)

8. Domain d5trwa_: 5trw A: [326108]
   automated match to d1td2a_
   complexed with cl, edo, nhe, no3, so4

Details for d5trwa_

PDB Entry: 5trw, 1.6 Å

PDB Description: crystal structure of pyridoxamine kinase pdxy from burkholderia xenovorans

PDB Compounds: (A:) Pyridoxal kinase PdxY

SCOPe Domain Sequences for d5trwa_:

Sequence, based on SEQRES records:

>d5trwa_ c.72.1.5 (A:) automated matches {Burkholderia xenovorans [TaxId: 266265]}
mtknvlsiqshvvfghagnsaavfpmrrlgvnvwplntvqfsnhtqyghwtggaidatqm
velvdgigaigmlprcdavlsgylgtpeqaqsvleivkavkaanprawyfcdpvmgavsg
ckvepgiqeflvrtmpgvadamapnhtelqrlvgreietleeavtacreliargpklvlv
khlldrnspadrfnmlvvtereawmgqrplypfarqpvgvgdltsavfvartllgdsira
afehtlaavnavvkatwqagryelelvaaqseiaqprewfdawvgd

Sequence, based on observed residues (ATOM records):

>d5trwa_ c.72.1.5 (A:) automated matches {Burkholderia xenovorans [TaxId: 266265]}
mtknvlsiqshvvfghagnsaavfpmrrlgvnvwplntvqfsnhtqyghwtggaidatqm
velvdgigaigmlprcdavlsgylgtpeqaqsvleivkavkaanprawyfcdpvmepgiq
eflvrtmpgvadamapnhtelqrlvgreietleeavtacreliargpklvlvkhlldrns
padrfnmlvvtereawmgqrplypfarqpvgvgdltsavfvartllgdsiraafehtlaa
vnavvkatwqagryelelvaaqseiaqprewfdawvgd

Timeline for d5trwa_:

• d5trwa_ is new in SCOPe 2.06-stable
  
• d5trwa_ appears in SCOPe 2.07
  
• d5trwa_ appears in the current release, SCOPe 2.08