SCOPe 2.08: Domain d1d2ma1: 1d2m A:2-409

Lineage for d1d2ma1 (1d2m A:2-409)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.19: Tandem AAA-ATPase domain [81268] (41 proteins)
   duplication: tandem repeat of two RecA-like (AAA) domains

6. Protein Nucleotide excision repair enzyme UvrB, N-terminal domain [418968] (2 species)
   contains large insertions in the AAA domain

7. Species Thermus thermophilus [TaxId:274] [419432] (2 PDB entries)

8. Domain d1d2ma1: 1d2m A:2-409 [32417]
   Other proteins in same PDB: d1d2ma2
   complexed with bog, so4
   has additional subdomain(s) that are not in the common domain

Details for d1d2ma1

PDB Entry: 1d2m, 1.9 Å

PDB Description: uvrb protein of thermus thermophilus hb8; a nucleotide excision repair enzyme

PDB Compounds: (A:) excinuclease abc subunit b

SCOPe Domain Sequences for d1d2ma1:

Sequence, based on SEQRES records:

>d1d2ma1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB, N-terminal domain {Thermus thermophilus [TaxId: 274]}
tfryrgpspkgdqpkaiaglvealrdgerfvtllgatgtgktvtmakviealgrpalvla
pnkilaaqlaaefrelfpenaveyfisyydyyqpeayvpgkdlyiekdasinpeierlrh
sttrslltrrdvivvasvsaiyglgdpreyrarnlvvergkpyprevllerllelgyqrn
didlspgrfrakgevleifpayetepirvelfgdeverisqvhpvtgerlrelpgfvlfp
athylspegleeilkeiekelwervryfeergevlyaqrlkertlydlemlrvmgtcpgv
enyaryftgkapgeppytlldyfpedflvfldeshvtvpqlqgmyrgdyarkktlvdygf
rlpsaldnrplrfeeflervsqvvfvsatpgpfelahsgrvveqiirp

Sequence, based on observed residues (ATOM records):

>d1d2ma1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB, N-terminal domain {Thermus thermophilus [TaxId: 274]}
tfryrgpspkgdqpkaiaglvealrdgerfvtllgatgtgktvtmakviealgrpalvla
pnkilaaqlaaefrelfpenaveyfisyydyyqpeayvpgkdlyiekdasinpeierlrh
sttrslltrrdvivvasvsaiyglgdpreyrarnlvvrevllerllelgyqrndidlspg
rfrakgevleifpayetepirvelgfvlfpathylspegleeilkeiekelwervryfee
rgevlyaqrlkertlydlemlrvmgtcpgvenyaryftgkapgeppytlldyfpedflvf
ldeshvtvpqlqgmyrgdyarkktlvdygfrlpsaldnrplrfeeflervsqvvfvsatp
gpfelahsgrvveqiirp

Timeline for d1d2ma1:

• d1d2ma1 first appeared (with stable ids) in SCOP 1.55
  
• d1d2ma1 appears in SCOPe 2.07