SCOPe 2.06: Domain d5favb1: 5fav B:53-846

Lineage for d5favb1 (5fav B:53-846)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily)
   contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel

4. Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families)
   duplication: the N- and C-terminal halves have similar topologies

5. Family c.7.1.0: automated matches [275322] (1 protein)
   not a true family

6. Protein automated matches [275324] (2 species)
   not a true protein

7. Species Desulfovibrio alaskensis [TaxId:207559] [323257] (5 PDB entries)

8. Domain d5favb1: 5fav B:53-846 [323264]
   Other proteins in same PDB: d5fava2, d5favb2
   automated match to d5a0uh_
   complexed with mli, na; mutant

Details for d5favb1

PDB Entry: 5fav, 1.6 Å

PDB Description: e491q mutant of choline tma-lyase

PDB Compounds: (B:) Choline trimethylamine-lyase

SCOPe Domain Sequences for d5favb1:

Sequence; same for both SEQRES and ATOM records:

>d5favb1 c.7.1.0 (B:53-846) automated matches {Desulfovibrio alaskensis [TaxId: 207559]}
gipdgptprhvklkenflkqvpsitvqravaitkiakenpglpkpllraktfryccetap
lviqdhelivgspngapragafspevawrwlqdeldtigsrpqdpfyiseedkkvlreev
fpfwqnksvdefcegqyreadlwemsgesfvsdcsyhavngggdsnpgydvilmkkgmld
iqrearekleqldyanpedidkiyfyksvietaegvmiyarrlsayaaelaaretdprrk
aelqkisevnarvpahapsnfweaiqavwtvesllvveenqtgmsigrvdqymypfyrad
idsgrlteyeafdlagcmlvkmsemmwitsegaskffagyqpfvnmcvggvtreghdatn
dltymlmdavrhvriyqptlatrvhnkspqkylkkivdvirsgmgfpavhfddahikmml
akgvsiedardyclmgcvqpqksgrlyqwtstgytqwpicielvlnhgvplwygkkvtpd
mgdlsqydtyekfeaavkeqirwitkntsvatvisqrahrelapkplmslmyegcmesgr
dvsaggamynfgpgvvwsglatyvdsmaaikklvyddrkytlaqlnealkadfagydqil
adclaapkygndddyadmiaadlvhftetehrkyktlysvlshgtlsisnntpfgqllga
sangrrawmplsdgisptqgadykgptaiiksvskmandnmnigmvhnfklmsglldtpe
genglitlirtacmlgngemqfnyldnellldaqkhpekyrdlvvrvagysaffvelckd
vqdeiisrtmlhgf

Timeline for d5favb1:

• d5favb1 is new in SCOPe 2.06-stable
  
• d5favb1 appears in SCOPe 2.07
  
• d5favb1 appears in the current release, SCOPe 2.08