Lineage for d5jfpa_ (5jfp A:)

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.50: Acid proteases [50629] (1 superfamily)
    barrel, closed; n=6, S=10, complex topology
  4. Superfamily b.50.1: Acid proteases [50630] (4 families) (S)
  5. Family b.50.1.1: Retroviral protease (retropepsin) [50631] (9 proteins)
    dimer of identical mono-domain chains, each containing (6,10) barrel
  6. Protein Human immunodeficiency virus type 1 protease [50632] (9 species)
  7. Species Human immunodeficiency virus type 1 [TaxId:11676] [50633] (578 PDB entries)
    Uniprot P35963 57-155 ! Uniprot P04587 69-167 ! Uniprot P03366 69-167 ! Uniprot P03367 69-167 ! Uniprot P03368 69-167
  8. Domain d5jfpa_: 5jfp A: [323025]
    automated match to d1sdta_
    complexed with 6kk, cl, na

Details for d5jfpa_

PDB Entry: 5jfp (more details), 1.49 Å

PDB Description: hiv-1 wild type protease with grl-097-13a (a adamantane p1-ligand with bis-thf in p2 and isobutylamine in p1')
PDB Compounds: (A:) Protease

SCOPe Domain Sequences for d5jfpa_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5jfpa_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}
pqitlwkrplvtikiggqlkealldtgaddtvieemslpgrwkpkmiggiggfikvrqyd
qiiieiaghkaigtvlvgptpvniigrnlltqigatlnf

SCOPe Domain Coordinates for d5jfpa_ are not available.

Timeline for d5jfpa_:

Domains from other chains:
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d5jfpb_