Lineage for d5aypb_ (5ayp B:)

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2337561Fold a.128: Terpenoid synthases [48575] (1 superfamily)
    multihelical; core: 8 helices (C-J) are arranged in 2 parallel layers
  4. 2337562Superfamily a.128.1: Terpenoid synthases [48576] (6 families) (S)
    duplication: two metal-binding sites are related by a pseudo dyad that also relates helices C-F to helices G-J
  5. 2337969Family a.128.1.0: automated matches [196408] (1 protein)
    not a true family
  6. 2337970Protein automated matches [196409] (38 species)
    not a true protein
  7. 2338007Species Geobacillus stearothermophilus [TaxId:1422] [322626] (1 PDB entry)
  8. 2338009Domain d5aypb_: 5ayp B: [322675]
    automated match to d1rtra_

Details for d5aypb_

PDB Entry: 5ayp (more details), 2.31 Å

PDB Description: crystal structure of bacillus stearothermophilus farnesyl pyrophosphate synthase
PDB Compounds: (B:) Farnesyl Diphosphate Synthase

SCOPe Domain Sequences for d5aypb_:

Sequence, based on SEQRES records: (download)

>d5aypb_ a.128.1.0 (B:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}
qlsveqflneqkqavetalsryierlegpaklkkamaysleaggkrirpllllstvralg
kdpavglpvacaiemihtyslihddlpsmdnddlrrgkptnhkvfgeamailagdgllty
afqliteidderippsvrlrlierlakaagpegmvagqaadmegegktltlseleyihrh
ktgkmlqysvhagaliggadarqtreldefaahlglafqirddildiegaeekigkpvgs
dqsnnkatypallslagakeklafhieaaqrhlrnadvdgaalayicelvaar

Sequence, based on observed residues (ATOM records): (download)

>d5aypb_ a.128.1.0 (B:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}
qlsveqflneqkqavetalsryierlegpaklkkamaysleaggkrirpllllstvralg
kdpavglpvacaiemihtyslihddlpsmkptnhkvfgeamailagdglltyafqlitei
dderippsvrlrlierlakaagpegmvagqaadmegegktltlseleyihrhktgkmlqy
svhagaliggadarqtreldefaahlglafqirddildtypallslagakeklafhieaa
qrhlrnadvdgaalayicelvaar

SCOPe Domain Coordinates for d5aypb_:

Click to download the PDB-style file with coordinates for d5aypb_.
(The format of our PDB-style files is described here.)

Timeline for d5aypb_:

View in 3D
Domains from other chains:
(mouse over for more information)
d5aypa_