SCOPe 2.06: Domain d5koja_: 5koj A:

Lineage for d5koja_ (5koj A:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.92: Chelatase-like [53799] (3 superfamilies)
   duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134

4. Superfamily c.92.2: "Helical backbone" metal receptor [53807] (5 families)
   contains a long alpha helical insertion in the interdomain linker

5. Family c.92.2.3: Nitrogenase iron-molybdenum protein [53816] (3 proteins)
   contains three domains of this fold; "Helical backbone" holds domains 2 and 3
   both chains are homologous; the inter-chain arrangement of domains 1 is similar to the intra-chain arrangement of domains 2 and 3
   automatically mapped to Pfam PF00148

6. Protein automated matches [190199] (3 species)
   not a true protein

7. Species Gluconacetobacter diazotrophicus [TaxId:272568] [322657] (2 PDB entries)

8. Domain d5koja_: 5koj A: [322658]
   Other proteins in same PDB: d5kojb_, d5kojd_
   automated match to d1fp4a_
   complexed with clf, fe, hca, ics

Details for d5koja_

PDB Entry: 5koj, 2.59 Å

PDB Description: nitrogenase mofep protein in the ids oxidized state

PDB Compounds: (A:) Nitrogenase protein alpha chain

SCOPe Domain Sequences for d5koja_:

Sequence, based on SEQRES records:

>d5koja_ c.92.2.3 (A:) automated matches {Gluconacetobacter diazotrophicus [TaxId: 272568]}
dktndsafharliaevleaypdkarkrrqkhlnvagqaeaeaqdageegvmlsecdvksn
vksvpgvmtirgcayagskgvvwgpvkdmvhishgpvgcgqyswsqrrnyyigntgvdsf
vtmqftsdfqekdivfggdkklekiideidelfplakgisvqsecpigligddieavsrk
kkkeigktivpvrcegfrgvsqslghhiandairdwvfdgedkhaafettpydvnvigdy
niggdawssrilleemglrvvgnwsgdatlaeierapkaklnlihcyrsmnyicrhmeek
ynipwteynffgpsqiaaslrkiaalfdekiqegaerviakyqplvdaviekfrprlagk
kvmlyvgglrprhvvnayndlgmeivgtgyefghnddyqrtghyvregtliyddvtgyel
ekfiegirpdlvgsgikekypvqkmgipfrqmhswdysgpyhgydgfaifardmdlainn
pvwsmfkapw

Sequence, based on observed residues (ATOM records):

>d5koja_ c.92.2.3 (A:) automated matches {Gluconacetobacter diazotrophicus [TaxId: 272568]}
dktndsafharliaevleaypdkarkrrqkhlnvagqaegvmlsecdvksnvksvpgvmt
irgcayagskgvvwgpvkdmvhishgpvgcgqyswsqrrnyyigntgvdsfvtmqftsdf
qekdivfggdkklekiideidelfplakgisvqsecpigligddieavsrkkkkeigkti
vpvrcegfrgvsqslghhiandairdwvfdgedkhaafettpydvnvigdyniggdawss
rilleemglrvvgnwsgdatlaeierapkaklnlihcyrsmnyicrhmeekynipwteyn
ffgpsqiaaslrkiaalfdekiqegaerviakyqplvdaviekfrprlagkkvmlyvggl
rprhvvnayndlgmeivgtgyefghnddyqrtghyvregtliyddvtgyelekfiegirp
dlvgsgikekypvqkmgipfrqmhswdysgpyhgydgfaifardmdlainnpvwsmfkap
w

Timeline for d5koja_:

• d5koja_ is new in SCOPe 2.06-stable
  
• d5koja_ appears in SCOPe 2.07
  
• d5koja_ appears in the current release, SCOPe 2.08