Lineage for d5j7aa_ (5j7a A:)

  1. Root: SCOPe 2.08
  2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
  3. Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
    core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
  4. Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families) (S)
    Pfam PF13853. Phylogeny described in PubMed 12761335
  5. Family f.13.1.1: Bacteriorhodopsin-like [81319] (6 proteins)
  6. Protein Bacteriorhodopsin [56871] (3 species)
    a light-driven proton pump
  7. Species Halobacterium salinarum [TaxId:2242] [56873] (118 PDB entries)
    Uniprot P02945 17-245
  8. Domain d5j7aa_: 5j7a A: [321912]
    automated match to d1r84a_
    complexed with li1, ret

Details for d5j7aa_

PDB Entry: 5j7a (more details), 2.3 Å

PDB Description: bacteriorhodopsin ground state structure obtained with serial femtosecond crystallography
PDB Compounds: (A:) bacteriorhodopsin

SCOPe Domain Sequences for d5j7aa_:

Sequence, based on SEQRES records: (download)

>d5j7aa_ f.13.1.1 (A:) Bacteriorhodopsin {Halobacterium salinarum [TaxId: 2242]}
tgrpewiwlalgtalmglgtlyflvkgmgvsdpdakkfyaittlvpaiaftmylsmllgy
gltmvpfggeqnpiywaryadwlfttplllldlallvdadqgtilalvgadgimigtglv
galtkvysyrfvwwaistaamlyilyvlffgftskaesmrpevastfkvlrnvtvvlwsa
ypvvwligsegagivplnietllfmvldvsakvgfglillrsraifg

Sequence, based on observed residues (ATOM records): (download)

>d5j7aa_ f.13.1.1 (A:) Bacteriorhodopsin {Halobacterium salinarum [TaxId: 2242]}
tgrpewiwlalgtalmglgtlyflvkgmgvsdpdakkfyaittlvpaiaftmylsmllgy
gltmvpfggeqnpiywaryadwlfttplllldlallvdadqgtilalvgadgimigtglv
galtkvysyrfvwwaistaamlyilyvlffskaesmrpevastfkvlrnvtvvlwsaypv
vwligsegagivplnietllfmvldvsakvgfglillrsraifg

SCOPe Domain Coordinates for d5j7aa_ are not available.

Timeline for d5j7aa_: