Lineage for d5d9fa1 (5d9f A:1-245)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2528466Fold c.116: alpha/beta knot [75216] (1 superfamily)
    core: 3 layers: a/b/a, parallel beta-sheet of 5 strands, order 21435; contains a deep trefoil knot
  4. 2528467Superfamily c.116.1: alpha/beta knot [75217] (9 families) (S)
    known or predicted SAM-dependent methytransferases including the SPOUT 'sequence' superfamily
    all known members have dimeric structures
  5. 2528542Family c.116.1.4: tRNA(m1G37)-methyltransferase TrmD [89629] (2 proteins)
    fold and dimerisation mode are similar to those of the YbeA-like family; contains additional C-terminal all-alpha subdomain
  6. 2528555Protein automated matches [196235] (4 species)
    not a true protein
  7. 2528556Species Haemophilus influenzae [TaxId:71421] [196236] (37 PDB entries)
  8. 2528584Domain d5d9fa1: 5d9f A:1-245 [321875]
    Other proteins in same PDB: d5d9fa2
    automated match to d4mccb_
    protein/RNA complex; complexed with 58g

Details for d5d9fa1

PDB Entry: 5d9f (more details), 1.91 Å

PDB Description: crystal structure of trmd, a m1g37 trna methyltransferase with sam- competitive compounds
PDB Compounds: (A:) tRNA (guanine-N(1)-)-methyltransferase

SCOPe Domain Sequences for d5d9fa1:

Sequence, based on SEQRES records: (download)

>d5d9fa1 c.116.1.4 (A:1-245) automated matches {Haemophilus influenzae [TaxId: 71421]}
mwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpygggpgm
lmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryegide
rliqteideewsigdyvltggelpamtlidavarfipgvlgkqasaeedsfadglldcph
ytrpevlegltvppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkea
qaehn

Sequence, based on observed residues (ATOM records): (download)

>d5d9fa1 c.116.1.4 (A:1-245) automated matches {Haemophilus influenzae [TaxId: 71421]}
mwigvislfpemfkaitefgvtgravkhnllkvecwnprdftfdkhktvddrpygggpgm
lmmvqplrdaihtakaaagegakviylspqgrkldqggvtelaqnqklilvcgryegide
rliqteideewsigdyvltggelpamtlidavarfipgvlgdglldcphytrpevleglt
vppvlmsghheeirkwrlkqslqrtwlrrpelleglaltdeqrkllkeaqaehn

SCOPe Domain Coordinates for d5d9fa1:

Click to download the PDB-style file with coordinates for d5d9fa1.
(The format of our PDB-style files is described here.)

Timeline for d5d9fa1:

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Domains from same chain:
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d5d9fa2