Lineage for Species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2316812Fold a.29: Bromodomain-like [47363] (15 superfamilies)
    4 helices; bundle; minor mirror variant of up-and-down topology
  4. 2317865Superfamily a.29.3: Acyl-CoA dehydrogenase C-terminal domain-like [47203] (3 families) (S)
    multidomain flavoprotein; N-terminal domain is all-alpha; the middle domain is open (5,8) barrel
  5. 2317999Family a.29.3.0: automated matches [227204] (1 protein)
    not a true family
  6. 2318000Protein automated matches [226935] (28 species)
    not a true protein
  7. 2318142Species Nematode (Caenorhabditis elegans) [TaxId:6239] [321815] (4 PDB entries)

PDB entries in Species: Nematode (Caenorhabditis elegans) [TaxId: 6239]:

  1. Domain(s) for 5k3g:
    1. 2318179Domain d5k3ga2: 5k3g A:297-483 [344303]
      Other proteins in same PDB: d5k3ga1, d5k3gb1, d5k3gc1, d5k3gd1
      automated match to d5k3ic2
    2. 2318180Domain d5k3ga3: 5k3g A:484-669 [344304]
      Other proteins in same PDB: d5k3ga1, d5k3gb1, d5k3gc1, d5k3gd1
      automated match to d5k3ic3
    3. 2318181Domain d5k3gb2: 5k3g B:297-483 [344306]
      Other proteins in same PDB: d5k3ga1, d5k3gb1, d5k3gc1, d5k3gd1
      automated match to d5k3ic2
    4. 2318182Domain d5k3gb3: 5k3g B:484-669 [344307]
      Other proteins in same PDB: d5k3ga1, d5k3gb1, d5k3gc1, d5k3gd1
      automated match to d5k3ic3
    5. 2318183Domain d5k3gc2: 5k3g C:299-483 [344309]
      Other proteins in same PDB: d5k3ga1, d5k3gb1, d5k3gc1, d5k3gd1
      automated match to d5k3ic2
    6. 2318184Domain d5k3gc3: 5k3g C:484-669 [344310]
      Other proteins in same PDB: d5k3ga1, d5k3gb1, d5k3gc1, d5k3gd1
      automated match to d5k3ic3
    7. 2318185Domain d5k3gd2: 5k3g D:299-484 [321816]
      Other proteins in same PDB: d5k3ga1, d5k3gb1, d5k3gc1, d5k3gd1
      automated match to d1is2a1
    8. 2318186Domain d5k3gd3: 5k3g D:487-669 [321817]
      Other proteins in same PDB: d5k3ga1, d5k3gb1, d5k3gc1, d5k3gd1
      automated match to d2ddha2
  2. Domain(s) for 5k3h:
    1. 2318143Domain d5k3ha2: 5k3h A:297-483 [345727]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic2
    2. 2318144Domain d5k3ha3: 5k3h A:484-669 [345728]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic3
    3. 2318145Domain d5k3hb2: 5k3h B:299-483 [345730]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic2
    4. 2318146Domain d5k3hb3: 5k3h B:484-669 [345731]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic3
    5. 2318147Domain d5k3hc2: 5k3h C:299-483 [345733]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic2
    6. 2318148Domain d5k3hc3: 5k3h C:484-669 [345734]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic3
    7. 2318149Domain d5k3hd2: 5k3h D:299-483 [345736]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic2
    8. 2318150Domain d5k3hd3: 5k3h D:484-669 [345737]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic3
    9. 2318151Domain d5k3he2: 5k3h E:299-483 [345739]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic2
    10. 2318152Domain d5k3he3: 5k3h E:484-669 [345740]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic3
    11. 2318153Domain d5k3hf2: 5k3h F:299-483 [345742]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic2
    12. 2318154Domain d5k3hf3: 5k3h F:484-669 [345743]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic3
    13. 2318155Domain d5k3hg2: 5k3h G:299-483 [345745]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic2
    14. 2318156Domain d5k3hg3: 5k3h G:484-669 [345746]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic3
    15. 2318157Domain d5k3hh2: 5k3h H:299-483 [345748]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic2
    16. 2318158Domain d5k3hh3: 5k3h H:484-669 [345749]
      Other proteins in same PDB: d5k3ha1, d5k3hb1, d5k3hc1, d5k3hd1, d5k3he1, d5k3hf1, d5k3hg1, d5k3hh1
      automated match to d5k3ic3
  3. Domain(s) for 5k3i:
    1. 2318159Domain d5k3ia2: 5k3i A:290-483 [344312]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d5k3ic2
      complexed with atp, fad, mg
    2. 2318160Domain d5k3ia3: 5k3i A:484-669 [344313]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d5k3ic3
      complexed with atp, fad, mg
    3. 2318161Domain d5k3ib2: 5k3i B:290-483 [344315]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d5k3ic2
      complexed with atp, fad, mg
    4. 2318162Domain d5k3ib3: 5k3i B:484-669 [344316]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d5k3ic3
      complexed with atp, fad, mg
    5. 2318163Domain d5k3ic2: 5k3i C:290-483 [322307]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d1is2a1
      complexed with atp, fad, mg
    6. 2318164Domain d5k3ic3: 5k3i C:488-669 [322308]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d2ddha2
      complexed with atp, fad, mg
    7. 2318165Domain d5k3id2: 5k3i D:290-483 [322209]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d1is2a1
      complexed with atp, fad, mg
    8. 2318166Domain d5k3id3: 5k3i D:488-669 [322210]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d2ddha2
      complexed with atp, fad, mg
    9. 2318167Domain d5k3ie2: 5k3i E:290-483 [344318]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d5k3ic2
      complexed with atp, fad, mg
    10. 2318168Domain d5k3ie3: 5k3i E:484-669 [344319]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d5k3ic3
      complexed with atp, fad, mg
    11. 2318169Domain d5k3if2: 5k3i F:290-481 [322438]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d1is2a1
      complexed with atp, fad, mg
    12. 2318170Domain d5k3if3: 5k3i F:488-669 [322439]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d2ddha2
      complexed with atp, fad, mg
    13. 2318171Domain d5k3ig2: 5k3i G:290-482 [322315]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d1is2a1
      complexed with atp, fad, mg
    14. 2318172Domain d5k3ig3: 5k3i G:487-669 [322316]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d2ddha2
      complexed with atp, fad, mg
    15. 2318173Domain d5k3ih2: 5k3i H:290-483 [344321]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d5k3ic2
      complexed with atp, fad, mg
    16. 2318174Domain d5k3ih3: 5k3i H:484-669 [344322]
      Other proteins in same PDB: d5k3ia1, d5k3ib1, d5k3ic1, d5k3id1, d5k3ie1, d5k3if1, d5k3ig1, d5k3ih1
      automated match to d5k3ic3
      complexed with atp, fad, mg
  4. Domain(s) for 5k3j:
    1. 2318175Domain d5k3ja2: 5k3j A:279-474 [322217]
      Other proteins in same PDB: d5k3ja1, d5k3ja4, d5k3jb1, d5k3jb4
      automated match to d1is2a1
      complexed with 6qa, atp, fad, mg
    2. 2318176Domain d5k3ja3: 5k3j A:475-661 [322218]
      Other proteins in same PDB: d5k3ja1, d5k3ja4, d5k3jb1, d5k3jb4
      automated match to d2ddha2
      complexed with 6qa, atp, fad, mg
    3. 2318177Domain d5k3jb2: 5k3j B:279-474 [322444]
      Other proteins in same PDB: d5k3ja1, d5k3ja4, d5k3jb1, d5k3jb4
      automated match to d1is2a1
      complexed with 6qa, atp, fad, mg
    4. 2318178Domain d5k3jb3: 5k3j B:475-661 [322445]
      Other proteins in same PDB: d5k3ja1, d5k3ja4, d5k3jb1, d5k3jb4
      automated match to d2ddha2
      complexed with 6qa, atp, fad, mg

More info for Species Nematode (Caenorhabditis elegans) [TaxId:6239] from a.29.3.0 automated matches

Timeline for Species Nematode (Caenorhabditis elegans) [TaxId:6239] from a.29.3.0 automated matches: