SCOPe 2.06: Domain d5dmxd1: 5dmx D:4-98

Lineage for d5dmxd1 (5dmx D:4-98)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.30: PreATP-grasp domain [52439] (1 superfamily)
   3 layers: a/b/a; parallel or mixed beta-sheet of 4 to 6 strands
   possible rudiment form of Rossmann-fold domain

4. Superfamily c.30.1: PreATP-grasp domain [52440] (10 families)
   precedes the ATP-grasp domain common to all superfamily members, can contain a substrate-binding function

5. Family c.30.1.0: automated matches [227183] (1 protein)
   not a true family

6. Protein automated matches [226903] (35 species)
   not a true protein

7. Species Acinetobacter baumannii [TaxId:405416] [321244] (2 PDB entries)

8. Domain d5dmxd1: 5dmx D:4-98 [321340]
   Other proteins in same PDB: d5dmxd2
   automated match to d4egjd1

Details for d5dmxd1

PDB Entry: 5dmx, 2.81 Å

PDB Description: crystal structure of d-alanine-d-alanine ligase from acinetobacter baumannii, space group p212121

PDB Compounds: (D:) d-alanine--d-alanine ligase

SCOPe Domain Sequences for d5dmxd1:

Sequence; same for both SEQRES and ATOM records:

>d5dmxd1 c.30.1.0 (D:4-98) automated matches {Acinetobacter baumannii [TaxId: 405416]}
atkfgkvavllggksaeravsldsgqavldallrsgvqaeafdpqdrsvtelvnydrafi
vlhgrggedgqiqgvlewlnipytgtgvqgsaigm

Timeline for d5dmxd1:

• d5dmxd1 is new in SCOPe 2.06-stable
  
• d5dmxd1 appears in SCOPe 2.07
  
• d5dmxd1 appears in the current release, SCOPe 2.08