SCOPe 2.07: Domain d5d8dd2: 5d8d D:99-305

Lineage for d5d8dd2 (5d8d D:99-305)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families)

5. Family d.142.1.0: automated matches [227184] (1 protein)
   not a true family

6. Protein automated matches [226904] (38 species)
   not a true protein

7. Species Acinetobacter baumannii [TaxId:405416] [321246] (2 PDB entries)

8. Domain d5d8dd2: 5d8d D:99-305 [321249]
   Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
   automated match to d4egjc2

Details for d5d8dd2

PDB Entry: 5d8d, 2.19 Å

PDB Description: crystal structure of d-alanine-d-alanine ligase from acinetobacter baumannii

PDB Compounds: (D:) d-alanine--d-alanine ligase

SCOPe Domain Sequences for d5d8dd2:

Sequence, based on SEQRES records:

>d5d8dd2 d.142.1.0 (D:99-305) automated matches {Acinetobacter baumannii [TaxId: 405416]}
dkvktkqiwqgsdlptapyriitketdldsviaelglpviikpvhegssvgmskvekaed
faaaiekatqhdavvmaekwitgreftisflngqplpvirlqppadvafydyeakyqrnd
veygipcglseteekklqalclrafqavgaegwgridamqdeqgnfwllevntvpgmtsh
slvpkaakavgysfdelcvaileqtle

Sequence, based on observed residues (ATOM records):

>d5d8dd2 d.142.1.0 (D:99-305) automated matches {Acinetobacter baumannii [TaxId: 405416]}
dkvktkqiwqgsdlptapyriitketdldsviaelglpviikpvhegssvgmskvekaed
faaaiekatqhdavvmaekwitgreftisflngqplpvirlqygipcglseteekklqal
clrafqavgaegwgridamqdeqgnfwllevntvpgmtshslvpkaakavgysfdelcva
ileqtle

Timeline for d5d8dd2:

• d5d8dd2 first appeared in SCOPe 2.06
  
• d5d8dd2 appears in the current release, SCOPe 2.08