SCOPe 2.08: Domain d5d8da2: 5d8d A:99-304

Lineage for d5d8da2 (5d8d A:99-304)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families)

5. Family d.142.1.0: automated matches [227184] (1 protein)
   not a true family

6. Protein automated matches [226904] (39 species)
   not a true protein

7. Species Acinetobacter baumannii [TaxId:405416] [321246] (2 PDB entries)

8. Domain d5d8da2: 5d8d A:99-304 [321247]
   Other proteins in same PDB: d5d8da1, d5d8db1, d5d8dc1, d5d8dd1, d5d8de1, d5d8df1
   automated match to d4egjc2

Details for d5d8da2

PDB Entry: 5d8d, 2.19 Å

PDB Description: crystal structure of d-alanine-d-alanine ligase from acinetobacter baumannii

PDB Compounds: (A:) d-alanine--d-alanine ligase

SCOPe Domain Sequences for d5d8da2:

Sequence, based on SEQRES records:

>d5d8da2 d.142.1.0 (A:99-304) automated matches {Acinetobacter baumannii [TaxId: 405416]}
dkvktkqiwqgsdlptapyriitketdldsviaelglpviikpvhegssvgmskvekaed
faaaiekatqhdavvmaekwitgreftisflngqplpvirlqppadvafydyeakyqrnd
veygipcglseteekklqalclrafqavgaegwgridamqdeqgnfwllevntvpgmtsh
slvpkaakavgysfdelcvaileqtl

Sequence, based on observed residues (ATOM records):

>d5d8da2 d.142.1.0 (A:99-304) automated matches {Acinetobacter baumannii [TaxId: 405416]}
dkvktkqiwqgsdlptapyriitketdldsviaelglpviikpvhegsvgmskvekaedf
aaaiekatqhdavvmaekwitgreftisflngqplpvirlqygipcglseteekklqalc
lrafqavgaegwgridamqdeqgnfwllevntvpgmtshslvpkaakavgysfdelcvai
leqtl

Timeline for d5d8da2:

• d5d8da2 first appeared in SCOPe 2.06
  
• d5d8da2 appears in SCOPe 2.07