Lineage for d5jpaa1 (5jpa A:1-147)

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2326304Fold a.73: Retrovirus capsid protein, N-terminal core domain [47942] (1 superfamily)
    core: 5 helices; bundle
  4. 2326305Superfamily a.73.1: Retrovirus capsid protein, N-terminal core domain [47943] (2 families) (S)
  5. 2326306Family a.73.1.1: Retrovirus capsid protein, N-terminal core domain [47944] (6 protein domains)
  6. 2326345Protein HIV-1 capsid protein [47945] (1 species)
  7. 2326346Species Human immunodeficiency virus type 1 [TaxId:11676] [47946] (50 PDB entries)
  8. 2326382Domain d5jpaa1: 5jpa A:1-147 [321101]
    Other proteins in same PDB: d5jpaa2
    automated match to d4xfxa1
    mutant

Details for d5jpaa1

PDB Entry: 5jpa (more details), 1.7 Å

PDB Description: hexameric hiv-1 ca h12y mutant
PDB Compounds: (A:) capsid protein p24

SCOPe Domain Sequences for d5jpaa1:

Sequence, based on SEQRES records: (download)

>d5jpaa1 a.73.1.1 (A:1-147) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivqnlqgqmvyqcisprtlnawvkvveekafspevipmfsalscgatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmysp

Sequence, based on observed residues (ATOM records): (download)

>d5jpaa1 a.73.1.1 (A:1-147) HIV-1 capsid protein {Human immunodeficiency virus type 1 [TaxId: 11676]}
pivqnlqgqmvyqcisprtlnawvkvveekafspevipmfsalscgatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpviapgqmreprgsdiagttstlqeqigwmthnppi
pvgeiykrwiilglnkivrmysp

SCOPe Domain Coordinates for d5jpaa1:

Click to download the PDB-style file with coordinates for d5jpaa1.
(The format of our PDB-style files is described here.)

Timeline for d5jpaa1:

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Domains from same chain:
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d5jpaa2