Lineage for d5cvpa_ (5cvp A:)

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2606866Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 2606867Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. 2607053Family d.167.1.0: automated matches [191587] (1 protein)
    not a true family
  6. 2607054Protein automated matches [191055] (20 species)
    not a true protein
  7. 2607163Species Xanthomonas oryzae [TaxId:64187] [188927] (16 PDB entries)
  8. 2607168Domain d5cvpa_: 5cvp A: [320262]
    automated match to d3dlda_
    complexed with 56f, act, cd, na

Details for d5cvpa_

PDB Entry: 5cvp (more details), 2 Å

PDB Description: structure of xoo1075, a peptide deformylase from xanthomonas oryzae pv oryze, in complex with fragment 571
PDB Compounds: (A:) Peptide deformylase

SCOPe Domain Sequences for d5cvpa_:

Sequence, based on SEQRES records: (download)

>d5cvpa_ d.167.1.0 (A:) automated matches {Xanthomonas oryzae [TaxId: 64187]}
mirdiirmgdkrllrvapqvtnlgsaelhalvsdmfetmgaahgvglaapqiavdlqlmv
fgfeaserypeapavpltalanaqieplsdemengwegclsipglravipryryiryrgf
apdgspiereaegfharvvqheydhlvgrlypsrienfdtfgfddvlsydl

Sequence, based on observed residues (ATOM records): (download)

>d5cvpa_ d.167.1.0 (A:) automated matches {Xanthomonas oryzae [TaxId: 64187]}
mirdiirmgdkrllrvapqvtnlgsaelhalvsdmfetmgaahgvglaapqiavdlqlmv
fgfeaeapavpltalanaqieplsdemengwegclsipglravipryryiryrgfapdgs
piereaegfharvvqheydhlvgrlypsrienfdtfgfddvlsydl

SCOPe Domain Coordinates for d5cvpa_:

Click to download the PDB-style file with coordinates for d5cvpa_.
(The format of our PDB-style files is described here.)

Timeline for d5cvpa_: