SCOPe 2.08: Domain d5kc9b_: 5kc9 B:

Lineage for d5kc9b_ (5kc9 B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   parallel beta-sheet of 6 strands, order 213456

4. Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families)
   Similar in architecture to the superfamily II but partly differs in topology

5. Family c.93.1.0: automated matches [191439] (1 protein)
   not a true family

6. Protein automated matches [190646] (77 species)
   not a true protein

7. Species Mouse (Mus musculus) [TaxId:10090] [320091] (1 PDB entry)

8. Domain d5kc9b_: 5kc9 B: [320092]
   automated match to d3qlud_
   complexed with bu1, cl, edo, nag, pg4

Details for d5kc9b_

PDB Entry: 5kc9, 2.3 Å

PDB Description: crystal structure of the amino-terminal domain (atd) of iglur delta-1 (glud1)

PDB Compounds: (B:) Glutamate receptor ionotropic, delta-1

SCOPe Domain Sequences for d5kc9b_:

Sequence, based on SEQRES records:

>d5kc9b_ c.93.1.0 (B:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
siihigaifeenaakddrvfqlavsdlslnddilqsekitysikvieannpfqavqeacd
lmtqgilalvtstgcasanalqsltdamhiphlfvqrnpggsprtachlnpspdgeaytl
asrppvrlndvmlrlvtelrwqkfvmfydseydirglqsfldqasrlgldvslqkvdkni
shvftslfttmkteelnryrdtlrrailllspqgahsfineavetnlaskdshwvfvnee
isdpeildlvhsalgrmtvvrqifpsakdnqkcmrnnhrissllcdpqegylqmlqisnl
ylydsvlmlanafhrkledrkwhsmaslncirkstkpwnggrsmldtikkghitgltgvm
efredssnpyvqfeilgttysetfgkdmrklatwdsekglngs

Sequence, based on observed residues (ATOM records):

>d5kc9b_ c.93.1.0 (B:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
siihigaifeenaakddrvfqlavsdlslnsekitysikvieannpfqavqeacdlmtqg
ilalvtstgcasanalqsltdamhiphlfvqrnpggsprtachlnpspdgeaytlasrpp
vrlndvmlrlvtelrwqkfvmfydseydirglqsfldqasrlgldvslqkvdknishvft
slfttmkteelnryrdtlrrailllspqgahsfineavetnlaskdshwvfvneeisdpe
ildlvhsalgrmtvvrqifpsahrissllcdpqegylqmlqisnlylydsvlmlanafhr
kledrkwhsmaslncirkstkpwnggrsmldtikkghitgltgvmefredssnpyvqfei
lgtgkdmrklatwdsekglngs

Timeline for d5kc9b_:

• d5kc9b_ first appeared in SCOPe 2.06
  
• d5kc9b_ appears in SCOPe 2.07