SCOPe 2.07: Domain d5ef8a_: 5ef8 A:

Lineage for d5ef8a_ (5ef8 A:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
   3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456

4. Superfamily c.42.1: Arginase/deacetylase [52768] (3 families)

5. Family c.42.1.0: automated matches [191435] (1 protein)
   not a true family

6. Protein automated matches [190626] (12 species)
   not a true protein

7. Species Zebrafish (Danio rerio) [TaxId:7955] [319911] (53 PDB entries)

8. Domain d5ef8a_: 5ef8 A: [319972]
   automated match to d3c10c_
   complexed with edo, gol, k, lbh, zn

Details for d5ef8a_

PDB Entry: 5ef8, 2.6 Å

PDB Description: crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 in complex with panobinostat

PDB Compounds: (A:) Hdac6 protein

SCOPe Domain Sequences for d5ef8a_:

Sequence; same for both SEQRES and ATOM records:

>d5ef8a_ c.42.1.0 (A:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
pitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeelal
chsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtgqv
rnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngtqh
ifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeymaa
fhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvliil
eggynltsisesmsmctsmllgdsppsldhltplktsatvsinnvlrahapfwsslr

Timeline for d5ef8a_:

• d5ef8a_ first appeared in SCOPe 2.06
  
• d5ef8a_ appears in the current release, SCOPe 2.08