SCOPe 2.08: Domain d5efkb_: 5efk B:

Lineage for d5efkb_ (5efk B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
   3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456

4. Superfamily c.42.1: Arginase/deacetylase [52768] (3 families)

5. Family c.42.1.0: automated matches [191435] (1 protein)
   not a true family

6. Protein automated matches [190626] (14 species)
   not a true protein

7. Species Zebrafish (Danio rerio) [TaxId:7955] [319911] (55 PDB entries)

8. Domain d5efkb_: 5efk B: [319929]
   automated match to d3c10c_
   complexed with edo, gol, k, mcm, no3, peg, zn; mutant

Details for d5efkb_

PDB Entry: 5efk, 1.82 Å

PDB Description: crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 (y745f mutant) in complex with alpha tubulin k40 tripeptide substrate

PDB Compounds: (B:) Hdac6 protein

SCOPe Domain Sequences for d5efkb_:

Sequence, based on SEQRES records:

>d5efkb_ c.42.1.0 (B:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
itglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeelalc
hsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtgqvr
navaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngtqhi
feeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeymaaf
hhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvliile
ggfnltsisesmsmctsmllgdsppsldhltplktsatvsinnvlrahapfwsslr

Sequence, based on observed residues (ATOM records):

>d5efkb_ c.42.1.0 (B:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
itglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeelalc
hsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtgqvr
navaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngtqhi
feeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeymaaf
hhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvliile
ggfnltsisesmsmctsmllgdsppslhltplktsatvsinnvlrahapfwsslr

Timeline for d5efkb_:

• d5efkb_ first appeared in SCOPe 2.06
  
• d5efkb_ appears in SCOPe 2.07