SCOPe 2.08: Domain d5eemb_: 5eem B:

Lineage for d5eemb_ (5eem B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
   3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456

4. Superfamily c.42.1: Arginase/deacetylase [52768] (3 families)

5. Family c.42.1.0: automated matches [191435] (1 protein)
   not a true family

6. Protein automated matches [190626] (14 species)
   not a true protein

7. Species Zebrafish (Danio rerio) [TaxId:7955] [319911] (55 PDB entries)

8. Domain d5eemb_: 5eem B: [319914]
   automated match to d3c10c_
   complexed with fmt, k, na, zn

Details for d5eemb_

PDB Entry: 5eem, 2 Å

PDB Description: crystal structure of danio rerio histone deacetylase 6 catalytic domain 2

PDB Compounds: (B:) Hdac6 protein

SCOPe Domain Sequences for d5eemb_:

Sequence, based on SEQRES records:

>d5eemb_ c.42.1.0 (B:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
pitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeelal
chsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtgqv
rnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngtqh
ifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeymaa
fhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvliil
eggynltsisesmsmctsmllgdsppsldhltplktsatvsinnvlrahapfwssl

Sequence, based on observed residues (ATOM records):

>d5eemb_ c.42.1.0 (B:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
pitglvydqrmmlhhnmwdshhpelpqrisrifsrheelrllsrchriparlateeelal
chsskhisiikssehmkprdlnrlgdeynsifisnesytcallaagscfnsaqailtgqv
rnavaivrppghhaekdtacgfcffntaaltaryaqsitreslrvlivdwdvhhgngtqh
ifeeddsvlyislhryedgaffpnsedanydkvglgkgrgynvnipwnggkmgdpeymaa
fhhlvmpiarefapelvlvsagfdaargdplggfqvtpegyahlthqlmslaagrvliil
eggynltsisesmsmctsmllgdsppsltplktsatvsinnvlrahapfwssl

Timeline for d5eemb_:

• d5eemb_ first appeared in SCOPe 2.06
  
• d5eemb_ appears in SCOPe 2.07