Lineage for Species: Zebrafish (Danio rerio) [TaxId: 7955]

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2481831Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
    3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
  4. 2481832Superfamily c.42.1: Arginase/deacetylase [52768] (3 families) (S)
  5. 2482296Family c.42.1.0: automated matches [191435] (1 protein)
    not a true family
  6. 2482297Protein automated matches [190626] (12 species)
    not a true protein
  7. 2482405Species Zebrafish (Danio rerio) [TaxId:7955] [319911] (53 PDB entries)

PDB entries in Species: Zebrafish (Danio rerio) [TaxId: 7955]:

  1. Domain(s) for 5eef:
    1. 2482482Domain d5eefa1: 5eef A:60-417 [319960]
      Other proteins in same PDB: d5eefa2, d5eefb2
      automated match to d3c10b_
      complexed with edo, nh4, so4, tsn, zn
    2. 2482483Domain d5eefb1: 5eef B:60-417 [320009]
      Other proteins in same PDB: d5eefa2, d5eefb2
      automated match to d3c10b_
      complexed with edo, nh4, so4, tsn, zn
  2. Domain(s) for 5eei:
    1. 2482416Domain d5eeia_: 5eei A: [319974]
      automated match to d3c10c_
      complexed with cl, edo, gol, k, mg, shh, zn
    2. 2482417Domain d5eeib_: 5eei B: [319958]
      automated match to d3c10c_
      complexed with cl, edo, gol, k, mg, shh, zn
  3. Domain(s) for 5eek:
  4. Domain(s) for 5eem:
    1. 2482475Domain d5eema_: 5eem A: [319981]
      automated match to d3c10c_
      complexed with fmt, k, na, zn
    2. 2482476Domain d5eemb_: 5eem B: [319914]
      automated match to d3c10c_
      complexed with fmt, k, na, zn
  5. Domain(s) for 5een:
    1. 2482460Domain d5eena_: 5een A: [319920]
      automated match to d3c10c_
      complexed with 5og, cl, k, zn
    2. 2482461Domain d5eenb_: 5een B: [319924]
      automated match to d3c10c_
      complexed with 5og, cl, k, zn
  6. Domain(s) for 5ef7:
    1. 2482464Domain d5ef7a_: 5ef7 A: [320023]
      automated match to d3c10c_
      complexed with 5oj, k, zn
    2. 2482465Domain d5ef7b_: 5ef7 B: [320051]
      automated match to d3c10c_
      complexed with 5oj, k, zn
  7. Domain(s) for 5ef8:
    1. 2482496Domain d5ef8a_: 5ef8 A: [319972]
      automated match to d3c10c_
      complexed with edo, gol, k, lbh, zn
    2. 2482497Domain d5ef8b_: 5ef8 B: [320050]
      automated match to d3c10c_
      complexed with edo, gol, k, lbh, zn
  8. Domain(s) for 5efb:
  9. Domain(s) for 5efg:
    1. 2482490Domain d5efga_: 5efg A: [319969]
      automated match to d3c10c_
      complexed with act, k, zn
    2. 2482491Domain d5efgd_: 5efg D: [319942]
      automated match to d3c10c_
      complexed with act, k, zn
  10. Domain(s) for 5efh:
    1. 2482484Domain d5efha_: 5efh A: [319985]
      automated match to d3c10c_
      complexed with br, edo, fks, gol, k, zn
    2. 2482485Domain d5efhd_: 5efh D: [319993]
      automated match to d3c10c_
      complexed with br, edo, fks, gol, k, zn
  11. Domain(s) for 5efj:
  12. Domain(s) for 5efk:
    • 2482457Domain d5efkb_: 5efk B: [319929]
      automated match to d3c10c_
      complexed with edo, gol, k, mcm, no3, peg, zn; mutant
  13. Domain(s) for 5g0g:
  14. Domain(s) for 5g0h:
  15. Domain(s) for 5g0i:
    1. 2482471Domain d5g0ia1: 5g0i A:58-419 [319962]
      automated match to d3c10c_
      complexed with cl, edo, k, n4r, zn
    2. 2482472Domain d5g0ia2: 5g0i A:442-801 [319963]
      automated match to d3c10c_
      complexed with cl, edo, k, n4r, zn
    3. 2482473Domain d5g0ib1: 5g0i B:59-418 [320069]
      automated match to d3c10c_
      complexed with cl, edo, k, n4r, zn
    4. 2482474Domain d5g0ib2: 5g0i B:442-801 [320070]
      automated match to d3c10c_
      complexed with cl, edo, k, n4r, zn
  16. Domain(s) for 5w5k:
    1. 2482498Domain d5w5ka1: 5w5k A:440-798 [354141]
      Other proteins in same PDB: d5w5ka2, d5w5kb2, d5w5kc2
      automated match to d5g0ha_
      complexed with k, k70, zn
    2. 2482499Domain d5w5kb1: 5w5k B:440-798 [354166]
      Other proteins in same PDB: d5w5ka2, d5w5kb2, d5w5kc2
      automated match to d5g0ha_
      complexed with k, k70, zn
    3. 2482500Domain d5w5kc1: 5w5k C:440-798 [354021]
      Other proteins in same PDB: d5w5ka2, d5w5kb2, d5w5kc2
      automated match to d5g0ha_
      complexed with k, k70, zn
  17. Domain(s) for 5wgi:
  18. Domain(s) for 5wgk:
  19. Domain(s) for 5wgl:
    1. 2482442Domain d5wgla_: 5wgl A: [342628]
      automated match to d3c10c_
      complexed with ah4, edo, flc, k, peg, zn
    2. 2482443Domain d5wglb_: 5wgl B: [342477]
      automated match to d3c10c_
      complexed with ah4, edo, flc, k, peg, zn
  20. Domain(s) for 5wgm:
    1. 2482447Domain d5wgma1: 5wgm A:440-798 [342525]
      Other proteins in same PDB: d5wgma2, d5wgmb2, d5wgmc2
      automated match to d3c10c_
      complexed with ah7, edo, k, peg, pge, zn
    2. 2482448Domain d5wgmb1: 5wgm B:440-798 [342473]
      Other proteins in same PDB: d5wgma2, d5wgmb2, d5wgmc2
      automated match to d3c10c_
      complexed with ah7, edo, k, peg, pge, zn
    3. 2482449Domain d5wgmc1: 5wgm C:440-798 [342561]
      Other proteins in same PDB: d5wgma2, d5wgmb2, d5wgmc2
      automated match to d3c10c_
      complexed with ah7, edo, k, peg, pge, zn
  21. Domain(s) for 6cgp:
  22. Domain(s) for 6csp:
    1. 2482410Domain d6cspa_: 6csp A: [352761]
      automated match to d5g0ha_
      complexed with cl, edo, fbm, k, peg, zn
    2. 2482411Domain d6cspb_: 6csp B: [352767]
      automated match to d5g0ha_
      complexed with cl, edo, fbm, k, peg, zn
  23. Domain(s) for 6csq:
    1. 2482477Domain d6csqa_: 6csq A: [352731]
      automated match to d5g0ha_
      complexed with f9p, k, zn
    2. 2482478Domain d6csqb_: 6csq B: [352730]
      automated match to d5g0ha_
      complexed with f9p, k, zn
  24. Domain(s) for 6csr:
    1. 2482434Domain d6csra_: 6csr A: [352996]
      automated match to d5g0ha_
      complexed with bho, edo, k, zn
    2. 2482435Domain d6csrb_: 6csr B: [353027]
      automated match to d5g0ha_
      complexed with bho, edo, k, zn
  25. Domain(s) for 6css:
    1. 2482440Domain d6cssa_: 6css A: [352976]
      automated match to d5g0ha_
      complexed with edo, fbj, k, zn
    2. 2482441Domain d6cssb_: 6css B: [352729]
      automated match to d5g0ha_
      complexed with edo, fbj, k, zn
  26. Domain(s) for 6cw8:
    1. 2482462Domain d6cw8a_: 6cw8 A: [360396]
      automated match to d5g0ha_
      complexed with edo, fgy, k, zn
    2. 2482463Domain d6cw8b_: 6cw8 B: [360361]
      automated match to d5g0ha_
      complexed with edo, fgy, k, zn
  27. Domain(s) for 6dvl:
    1. 2482479Domain d6dvla_: 6dvl A: [356729]
      automated match to d5g0ha_
      complexed with hbg, k, zn
    2. 2482480Domain d6dvlb_: 6dvl B: [356751]
      automated match to d5g0ha_
      complexed with hbg, k, zn
  28. Domain(s) for 6dvm:
    1. 2482421Domain d6dvma_: 6dvm A: [356759]
      automated match to d5g0ha_
      complexed with btb, edo, hbj, k, zn
    2. 2482422Domain d6dvmb_: 6dvm B: [356792]
      automated match to d5g0ha_
      complexed with btb, edo, hbj, k, zn
    3. 2482423Domain d6dvmc_: 6dvm C: [356873]
      automated match to d5g0ha_
      complexed with btb, edo, hbj, k, zn
    4. 2482424Domain d6dvmd_: 6dvm D: [356818]
      automated match to d5g0ha_
      complexed with btb, edo, hbj, k, zn
  29. Domain(s) for 6dvn:
    1. 2482486Domain d6dvna_: 6dvn A: [356769]
      automated match to d5g0ha_
      complexed with edo, hb7, k, zn
    2. 2482487Domain d6dvnb_: 6dvn B: [356706]
      automated match to d5g0ha_
      complexed with edo, hb7, k, zn
    3. 2482488Domain d6dvnc_: 6dvn C: [356817]
      automated match to d5g0ha_
      complexed with edo, hb7, k, zn
    4. 2482489Domain d6dvnd_: 6dvn D: [356709]
      automated match to d5g0ha_
      complexed with edo, hb7, k, zn
  30. Domain(s) for 6dvo:
  31. Domain(s) for 6mr5:
    1. 2482458Domain d6mr5a_: 6mr5 A: [360834]
      automated match to d5g0ha_
      complexed with edo, flc, k, peg, w45, zn
    2. 2482459Domain d6mr5b_: 6mr5 B: [360833]
      automated match to d5g0ha_
      complexed with edo, flc, k, peg, w45, zn
  32. Domain(s) for 6pye:
    1. 2482414Domain d6pyea_: 6pye A: [391227]
      automated match to d5g0ha_
      complexed with edo, k, p5y, zn
    2. 2482415Domain d6pyeb_: 6pye B: [391203]
      automated match to d5g0ha_
      complexed with edo, k, p5y, zn
  33. Domain(s) for 6pzo:
    1. 2482426Domain d6pzoa_: 6pzo A: [379820]
      automated match to d5g0ha_
      complexed with k, p6y, zn
    2. 2482427Domain d6pzob_: 6pzo B: [379806]
      automated match to d5g0ha_
      complexed with k, p6y, zn
  34. Domain(s) for 6pzr:
    1. 2482492Domain d6pzra_: 6pzr A: [379805]
      automated match to d5g0ha_
      complexed with edo, iod, k, p7d, zn
    2. 2482493Domain d6pzrb_: 6pzr B: [379822]
      automated match to d5g0ha_
      complexed with edo, iod, k, p7d, zn
  35. Domain(s) for 6pzs:
  36. Domain(s) for 6pzu:
    1. 2482445Domain d6pzua_: 6pzu A: [380031]
      automated match to d5g0ha_
      complexed with a6i, k, zn
    2. 2482446Domain d6pzub_: 6pzu B: [380036]
      automated match to d5g0ha_
      complexed with a6i, k, zn
  37. Domain(s) for 6q0z:
    1. 2482452Domain d6q0za_: 6q0z A: [379807]
      automated match to d5g0ha_
      complexed with k, p7v, zn
    2. 2482453Domain d6q0zb_: 6q0z B: [379824]
      automated match to d5g0ha_
      complexed with k, p7v, zn
  38. Domain(s) for 6r0k:
  39. Domain(s) for 6thv:
  40. Domain(s) for 6uo2:
    1. 2482436Domain d6uo2a_: 6uo2 A: [377933]
      automated match to d5g0ga_
      complexed with k, tsn, zn
    2. 2482437Domain d6uo2b_: 6uo2 B: [377907]
      automated match to d5g0ga_
      complexed with k, tsn, zn
  41. Domain(s) for 6uo3:
  42. Domain(s) for 6uo4:
    1. 2482412Domain d6uo4a_: 6uo4 A: [377903]
      automated match to d5g0ga_
      complexed with k, tsn, zn; mutant
    2. 2482413Domain d6uo4b_: 6uo4 B: [377904]
      automated match to d5g0ga_
      complexed with k, tsn, zn; mutant
  43. Domain(s) for 6uo5:
  44. Domain(s) for 6uo7:
  45. Domain(s) for 6uob:
    1. 2482430Domain d6uoba_: 6uob A: [377899]
      automated match to d5g0ga_
      complexed with edo, k, p7d, phe, zn; mutant
    2. 2482431Domain d6uobb_: 6uob B: [377895]
      automated match to d5g0ga_
      complexed with edo, k, p7d, phe, zn; mutant
  46. Domain(s) for 6uoc:
  47. Domain(s) for 6v79:
    1. 2482450Domain d6v79a_: 6v79 A: [395975]
      automated match to d5g0ha_
      complexed with edo, k, qqd, zn
    2. 2482451Domain d6v79b_: 6v79 B: [395965]
      automated match to d5g0ha_
      complexed with edo, k, qqd, zn
  48. Domain(s) for 6v7a:
  49. Domain(s) for 6vnr:
    1. 2482466Domain d6vnra_: 6vnr A: [385706]
      automated match to d5g0ha_
      complexed with edo, k, r5g, zn
    2. 2482467Domain d6vnrb_: 6vnr B: [385691]
      automated match to d5g0ha_
      complexed with edo, k, r5g, zn
  50. Domain(s) for 6wyo:
    1. 2482468Domain d6wyoa_: 6wyo A: [393108]
      automated match to d5g0ga_
      complexed with k, tsn, zn; mutant
    2. 2482469Domain d6wyob_: 6wyo B: [393114]
      automated match to d5g0ga_
      complexed with k, tsn, zn; mutant
  51. Domain(s) for 6wyp:
  52. Domain(s) for 6wyq:
    1. 2482438Domain d6wyqa_: 6wyq A: [393130]
      automated match to d5g0ga_
      complexed with k, ufj, zn; mutant
    2. 2482439Domain d6wyqb_: 6wyq B: [393123]
      automated match to d5g0ga_
      complexed with k, ufj, zn; mutant
  53. Domain(s) for 7jom:
    1. 2482428Domain d7joma_: 7jom A: [405334]
      automated match to d5g0ha_
      complexed with edo, fmt, k, to3, zn
    2. 2482429Domain d7jomb_: 7jom B: [405328]
      automated match to d5g0ha_
      complexed with edo, fmt, k, to3, zn

More info for Species Zebrafish (Danio rerio) [TaxId:7955] from c.42.1.0 automated matches

Timeline for Species Zebrafish (Danio rerio) [TaxId:7955] from c.42.1.0 automated matches: