SCOPe 2.06: Domain d5j40a_: 5j40 A:

Lineage for d5j40a_ (5j40 A:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.20: Extended AAA-ATPase domain [81269] (29 proteins)
   fold is similar to that of RecA, but lacks the last two strands, followed by a family-specific Arg-finger domain

6. Protein automated matches [190766] (4 species)
   not a true protein

7. Species Jc polyomavirus [TaxId:10632] [319763] (4 PDB entries)

8. Domain d5j40a_: 5j40 A: [319797]
   automated match to d1svmc_
   complexed with mes, so4, zn

Details for d5j40a_

PDB Entry: 5j40, 2.17 Å

PDB Description: the x-ray structure of jcv helicase

PDB Compounds: (A:) large t antigen

SCOPe Domain Sequences for d5j40a_:

Sequence, based on SEQRES records:

>d5j40a_ c.37.1.20 (A:) automated matches {Jc polyomavirus [TaxId: 10632]}
tkqvswklvtqyaldtkcedvfllmgmylnfqeapaacaacaaadqpnhfnhhekhyyna
qifadsknqksicqqavdtvaakqrvdslhmtreemlverfnflldkmdlifgahgnavl
eqymagvawihcllpqmdtviyeflkcivlnipkkrywlfkgpidsgkttlaaalldlcg
gkslnvnmplerlnfelgvgidqfmvvfedvkgtgaesrdlpsghgisnldclrdyldgs
vkvnlerkhqnkrtqvfppgivtmneysvprtlqarfvrqidfrpkaylrkslscseyll
ekrilqsgmtllllliwfrpvadfaaaiherivqwkerldleismytfstmkanvgmgap
ild

Sequence, based on observed residues (ATOM records):

>d5j40a_ c.37.1.20 (A:) automated matches {Jc polyomavirus [TaxId: 10632]}
tkqvswklvtqyaldtkcedvfllmgmylnfqeapaacaacaaadqpnhfnhhekhyyna
qifadsknqksicqqavdtvaakqrvdslhmtreemlverfnflldkmdlifgahgnavl
eqymagvawihcllpqmdtviyeflkcivlnipkkrywlfkgpidsgkttlaaalldlcg
gkslnvnmplerlnfelgvgidqfmvvfedvkgtgaesrdlpsghgisnldclrdyldgs
vkvnlerrtqvfppgivtmneysvprtlqarfvrqidfrpkaylrkslscseyllekril
qsgmtllllliwfrpvadfaaaiherivqwkerldleismytfstmkanvgmgapild

Timeline for d5j40a_:

• d5j40a_ is new in SCOPe 2.06-stable
  
• d5j40a_ appears in SCOPe 2.07
  
• d5j40a_ appears in the current release, SCOPe 2.08