SCOPe 2.08: Domain d5jzgc_: 5jzg C:

Lineage for d5jzgc_ (5jzg C:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.0: automated matches [191569] (1 protein)
   not a true family

6. Protein automated matches [190988] (51 species)
   not a true protein

7. Species Rhinovirus c [TaxId:463676] [319565] (2 PDB entries)

8. Domain d5jzgc_: 5jzg C: [319566]
   automated match to d1pov0_

Details for d5jzgc_

PDB Entry: 5jzg, 3.16 Å

PDB Description: cryoem structure of the native empty particle of a human rhinovirus c

PDB Compounds: (C:) capsid protein VP0

SCOPe Domain Sequences for d5jzgc_:

Sequence, based on SEQRES records:

>d5jzgc_ b.121.4.0 (C:) automated matches {Rhinovirus c [TaxId: 463676]}
gaqvsrqnngthengvtasngsvikyfninyykdsassglsrqdfsqdpskftqplvdtl
tnpalmspsveacgysdrlkqitignstittqdslhtvlaygewptylsdidatsvdkpt
hpetsadrfytldsvewqvgshgwwwklpdalkdmgvfgqnmyyhsmgrsgfiihtqcna
tkfhsgalivavipehqlayvggvkvnvgydhthpgqsghqirgpsqsndrsggkpdedp
lfncngtllgnitifphqiinlrtnnsstivvpyincvpmdnmlkhnnlslviiplvplr
pgssginsvpitvtiapyksefsgameaqrq

Sequence, based on observed residues (ATOM records):

>d5jzgc_ b.121.4.0 (C:) automated matches {Rhinovirus c [TaxId: 463676]}
gaqvssvikyfninyykdsassglsrqdfsqdpstltnpalmspsveacgysdrqitign
stittslhtvlaygewptylsdidatsvdkpthpetsadrfytldsvewqvgshgwwwkl
pdalkdmgvfgqnmyyhsmgrsgfiihtqcnatkfhsgalivavipehqlayvggvkvnv
gydhthpgqsghqirgpsqsndrsggkpdedplfncngtllgnitifphqiinlrtnnss
tivvpyincvpmdnmlkhnnlslviiplvplrpgssginsvpitvtiapyksefsgamea
qrq

Timeline for d5jzgc_:

• d5jzgc_ first appeared in SCOPe 2.06
  
• d5jzgc_ appears in SCOPe 2.07