Lineage for d1kima_ (1kim A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2109203Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2109204Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2109205Family c.37.1.1: Nucleotide and nucleoside kinases [52541] (21 protein domains)
    parallel beta-sheet of 5 strands, order 23145
  6. 2109585Protein Thymidine kinase [52552] (4 species)
    contains insert all-alpha subdomain, res. 251-322
  7. 2109599Species Herpes simplex virus type 1, different strains [TaxId:10298] [52553] (33 PDB entries)
    Uniprot P03176 46-375
  8. 2109626Domain d1kima_: 1kim A: [31864]
    protein/DNA complex; complexed with so4, thm

Details for d1kima_

PDB Entry: 1kim (more details), 2.14 Å

PDB Description: crystal structure of thymidine kinase from herpes simplex virus type i complexed with deoxythymidine
PDB Compounds: (A:) Thymidine kinase

SCOPe Domain Sequences for d1kima_:

Sequence, based on SEQRES records: (download)

>d1kima_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}
mptllrvyidgphgmgkttttqllvalgsrddivyvpepmtywrvlgasetianiyttqh
rldqgeisagdaavvmtsaqitmgmpyavtdavlaphiggeagsshapppaltlifdrhp
iaallcypaarylmgsmtpqavlafvalipptlpgtnivlgalpedrhidrlakrqrpge
rldlamlaairrvygllantvrylqcggswredwgqlsgtavppqgaepqsnagprphig
dtlftlfrapellapngdlynvfawaldvlakrlrsmhvfildydqspagcrdallqlts
gmvqthvttpgsipticdlartfaremgea

Sequence, based on observed residues (ATOM records): (download)

>d1kima_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}
mptllrvyidgphgmgkttttqllvdivyvpepmtywrvlgasetianiyttqhrldqge
isagdaavvmtsaqitmgmpyavtdavlaphiggeagppaltlifdrhpiaallcypaar
ylmgsmtpqavlafvalipptlpgtnivlgalpedrhidrlakrqrpgerldlamlaair
rvygllantvrylqcggswredwgqlsgprphigdtlftlfrapellapngdlynvfawa
ldvlakrlrsmhvfildydqspagcrdallqltsgmvqthvttpgsipticdlartfare
mgea

SCOPe Domain Coordinates for d1kima_:

Click to download the PDB-style file with coordinates for d1kima_.
(The format of our PDB-style files is described here.)

Timeline for d1kima_: