Lineage for d5hmma1 (5hmm A:20-185)

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2169006Fold c.120: PIN domain-like [88722] (1 superfamily)
    3 layers, a/b/a; core: parallel beta-sheet of 5 strands, order 32145
  4. 2169007Superfamily c.120.1: PIN domain-like [88723] (3 families) (S)
  5. 2169068Family c.120.1.2: 5' to 3' exonuclease catalytic domain [53045] (4 proteins)
    contains an alpha-helical arch and additional strand 6 antiparallel to the rest; strand order 321456; similarity to the resolvase-like fold
  6. 2169101Protein T5 5'-exonuclease [53050] (1 species)
  7. 2169102Species Bacteriophage T5 [TaxId:10726] [53051] (6 PDB entries)
  8. 2169105Domain d5hmma1: 5hmm A:20-185 [318000]
    Other proteins in same PDB: d5hmma2, d5hmmb2
    automated match to d1exna2
    complexed with cl, edo, mg

Details for d5hmma1

PDB Entry: 5hmm (more details), 1.5 Å

PDB Description: crystal structure of t5 d15 protein co-crystallized with metal ions
PDB Compounds: (A:) exodeoxyribonuclease

SCOPe Domain Sequences for d5hmma1:

Sequence, based on SEQRES records: (download)

>d5hmma1 c.120.1.2 (A:20-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
rnlmivdgtnlgfrfkhnnskkpfassyvstiqslaksysarttivlgdkgksvfrlehl
peykgnrdekyaqrteeekaldeqffeylkdafelckttfptftirgveaddmaayivkl
ighlydhvwlistdgdwdtlltdkvsrfsfttrreyhlrdmyehhn

Sequence, based on observed residues (ATOM records): (download)

>d5hmma1 c.120.1.2 (A:20-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
rnlmivdgtnlgfrfkkpfassyvstiqslaksysarttivlgdkgksvfrlehlpeykg
nrdekyaqrteeekaldeqffeylkdafelckttfptftirgveaddmaayivklighly
dhvwlistdgdwdtlltdkvsrfsfttrreyhlrdmyehhn

SCOPe Domain Coordinates for d5hmma1:

Click to download the PDB-style file with coordinates for d5hmma1.
(The format of our PDB-style files is described here.)

Timeline for d5hmma1:

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Domains from same chain:
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d5hmma2