Lineage for d5i2mc_ (5i2m C:)

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3020820Fold e.76: Viral glycoprotein ectodomain-like [161007] (1 superfamily)
    complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")
  4. 3020821Superfamily e.76.1: Viral glycoprotein ectodomain-like [161008] (3 families) (S)
  5. 3020850Family e.76.1.2: Spike glycoprotein-like [161012] (1 protein)
    Pfam PF00974; Rhabdovirus spike glycoprotein
  6. 3020851Protein Spike glycoprotein [161013] (2 species)
  7. 3020855Species Vesicular stomatitis indiana virus [TaxId:11277] [161014] (2 PDB entries)
    Uniprot P04883 17-425
    representative prefusion form 2CMZ; representative acidic conformation 2J6J
  8. 3020858Domain d5i2mc_: 5i2m C: [315017]
    automated match to d2j6ja_
    complexed with ca, pe4

Details for d5i2mc_

PDB Entry: 5i2m (more details), 2.4 Å

PDB Description: crystal structure of vsv-indiana (mudd-summers strain) glycoprotein under its acidic conformation
PDB Compounds: (C:) Glycoprotein G

SCOPe Domain Sequences for d5i2mc_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5i2mc_ e.76.1.2 (C:) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]}
kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch
askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehp

SCOPe Domain Coordinates for d5i2mc_:

Click to download the PDB-style file with coordinates for d5i2mc_.
(The format of our PDB-style files is described here.)

Timeline for d5i2mc_: