SCOPe 2.08: Domain d5i2ba1: 5i2b A:1-169

Lineage for d5i2ba1 (5i2b A:1-169)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.167: Peptide deformylase [56419] (1 superfamily)
   alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix

4. Superfamily d.167.1: Peptide deformylase [56420] (2 families)
   nickel-dependent enzyme

5. Family d.167.1.0: automated matches [191587] (1 protein)
   not a true family

6. Protein automated matches [191055] (20 species)
   not a true protein

7. Species Burkholderia ambifaria [TaxId:396596] [314970] (1 PDB entry)

8. Domain d5i2ba1: 5i2b A:1-169 [314971]
   Other proteins in same PDB: d5i2ba2
   automated match to d4nt8a_
   complexed with bb2, edo, zn

Details for d5i2ba1

PDB Entry: 5i2b, 1.7 Å

PDB Description: crystal structure of a peptide deformylase from burkholderia ambifaria with actinonin

PDB Compounds: (A:) Peptide deformylase

SCOPe Domain Sequences for d5i2ba1:

Sequence, based on SEQRES records:

>d5i2ba1 d.167.1.0 (A:1-169) automated matches {Burkholderia ambifaria [TaxId: 396596]}
mireilkmgdprllevakpvaqfdtpelheivadmfetmhhangaglaapqigiglqiii
fgfgsnnrypdappvpetvlinpkleymppdmeegwegclsvpgmrgvvsryakvrysgy
dqfgakidrvaegfharvvqheydhligklypmritdftrfgftevlfp

Sequence, based on observed residues (ATOM records):

>d5i2ba1 d.167.1.0 (A:1-169) automated matches {Burkholderia ambifaria [TaxId: 396596]}
mireilkmgdprllevakpvaqfdtpelheivadmfetmhhangaglaapqigiglqiii
fgfnrypdappvpetvlinpkleymppdmeegwegclsvpgmrgvvsryakvrysgydqf
gakidrvaegfharvvqheydhligklypmritdftrfgftevlfp

Timeline for d5i2ba1:

• d5i2ba1 first appeared in SCOPe 2.06
  
• d5i2ba1 appears in SCOPe 2.07