Lineage for d5i2sa_ (5i2s A:)

  1. Root: SCOPe 2.08
  2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. Fold e.76: Viral glycoprotein ectodomain-like [161007] (1 superfamily)
    complex fold; contains three rigid, mostly-beta domains and an alpha-helical region, acting as a conformatiomal switch ("fusion stalk")
  4. Superfamily e.76.1: Viral glycoprotein ectodomain-like [161008] (3 families) (S)
  5. Family e.76.1.2: Spike glycoprotein-like [161012] (1 protein)
    Pfam PF00974; Rhabdovirus spike glycoprotein
  6. Protein Spike glycoprotein [161013] (2 species)
  7. Species Vesicular stomatitis indiana virus [TaxId:11277] [161014] (2 PDB entries)
    Uniprot P04883 17-425
    representative prefusion form 2CMZ; representative acidic conformation 2J6J
  8. Domain d5i2sa_: 5i2s A: [314965]
    automated match to d2j6ja_
    complexed with nag, yb

Details for d5i2sa_

PDB Entry: 5i2s (more details), 3 Å

PDB Description: prefusion form of the vesicular stomatitis virus glycoprotein g ectodomain
PDB Compounds: (A:) Glycoprotein G

SCOPe Domain Sequences for d5i2sa_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5i2sa_ e.76.1.2 (A:) Spike glycoprotein {Vesicular stomatitis indiana virus [TaxId: 11277]}
kftivfphnqkgnwknvpsnyhycpsssdlnwhndligtalqvkmpkshkaiqadgwmch
askwvttcdfrwygpkyithsirsftpsveqckesieqtkqgtwlnpgfppqscgyatvt
daeavivqvtphhvlvdeytgewvdsqfingkcsnyicptvhnsttwhsdykvkglcdsn
lismditffsedgelsslgkegtgfrsnyfayetggkackmqyckhwgvrlpsgvwfema
dkdlfaaarfpecpegssisapsqtsvdvsliqdverildyslcqetwskiraglpispv
dlsylapknpgtgpaftiingtlkyfetryirvdiaapilsrmvgmisgttterelwddw
apyedveigpngvlrtssgykfplymighgmldsdlhlsskaqvfehphiqda

SCOPe Domain Coordinates for d5i2sa_ are not available.

Timeline for d5i2sa_: