SCOPe 2.06: Domain d5fp9a_: 5fp9 A:

Lineage for d5fp9a_ (5fp9 A:)

1. Root: SCOPe 2.06

2. Class b: All beta proteins [48724] (177 folds)

3. Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
   one turn of helix is made by two pairs of antiparallel strands linked with short turns
   has appearance of a sandwich of distinct architecture and jelly-roll topology

4. Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families)
   Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold

5. Family b.82.2.14: Histone demethylase core [254153] (4 proteins)
   Jumonji domain; Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801

6. Protein JMJD2D core [254343] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [254776] (8 PDB entries)

8. Domain d5fp9a_: 5fp9 A: [314492]
   automated match to d3dxua_
   complexed with 4sv, co, gol, so4, zn

Details for d5fp9a_

PDB Entry: 5fp9, 2 Å

PDB Description: crystal structure of human kdm4d in complex with 3- aminopyridine-4-carboxylic acid

PDB Compounds: (A:) human lysine-specific demethylase 4d jmjc domain-containing histone demethylation protein 3d, jumonji domain-containing protein 2d, jmjd2d

SCOPe Domain Sequences for d5fp9a_:

Sequence, based on SEQRES records:

>d5fp9a_ b.82.2.14 (A:) JMJD2D core {Human (Homo sapiens) [TaxId: 9606]}
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearvtfsmdafvrilqperydlwkrgq

Sequence, based on observed residues (ATOM records):

>d5fp9a_ b.82.2.14 (A:) JMJD2D core {Human (Homo sapiens) [TaxId: 9606]}
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearsmdafvrilqperydlwkrgq

Timeline for d5fp9a_:

• d5fp9a_ is new in SCOPe 2.06-stable
  
• d5fp9a_ appears in SCOPe 2.07
  
• d5fp9a_ appears in the current release, SCOPe 2.08