Lineage for d5fp9a_ (5fp9 A:)

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2403751Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2404605Superfamily b.82.2: Clavaminate synthase-like [51197] (16 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 2404954Family b.82.2.14: Histone demethylase core [254153] (4 protein domains)
    Jumonji domain; Pfam PF02375 (JmjN) and Pfam PF02373 (JmjC); relationship to FIH1 (b.82.2.6) described in PubMed 16983801
  6. 2405069Protein JMJD2D core [254343] (1 species)
  7. 2405070Species Human (Homo sapiens) [TaxId:9606] [254776] (8 PDB entries)
  8. 2405075Domain d5fp9a_: 5fp9 A: [314492]
    automated match to d3dxua_
    complexed with 4sv, co, gol, so4, zn

Details for d5fp9a_

PDB Entry: 5fp9 (more details), 2 Å

PDB Description: crystal structure of human kdm4d in complex with 3- aminopyridine-4-carboxylic acid
PDB Compounds: (A:) human lysine-specific demethylase 4d jmjc domain-containing histone demethylation protein 3d, jumonji domain-containing protein 2d, jmjd2d

SCOPe Domain Sequences for d5fp9a_:

Sequence, based on SEQRES records: (download)

>d5fp9a_ b.82.2.14 (A:) JMJD2D core {Human (Homo sapiens) [TaxId: 9606]}
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearvtfsmdafvrilqperydlwkrgq

Sequence, based on observed residues (ATOM records): (download)

>d5fp9a_ b.82.2.14 (A:) JMJD2D core {Human (Homo sapiens) [TaxId: 9606]}
aqnpncnimifhptkeefndfdkyiaymesqgahraglakiippkewkaretydniseil
iatplqqvasgragvftqyhkkkkamtvgeyrhlanskkyqtpphqnfedlerkywknri
ynspiygadisgslfdentkqwnlghlgtiqdllekecgvviegvntpylyfgmwkttfa
whtedmdlysinylhlgepktwyvvppehgqrlerlarelfpgssrgcgaflrhkvalis
ptvlkengipfnritqeagefmvtfpygyhagfnhgfncaeainfatprwidygkmasqc
scgearsmdafvrilqperydlwkrgq

SCOPe Domain Coordinates for d5fp9a_:

Click to download the PDB-style file with coordinates for d5fp9a_.
(The format of our PDB-style files is described here.)

Timeline for d5fp9a_: