SCOPe 2.04: Domain d1f8yb_: 1f8y B:

Lineage for d1f8yb_ (1f8y B:)

1. Root: SCOPe 2.04

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
   3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345

4. Superfamily c.23.14: N-(deoxy)ribosyltransferase-like [52309] (4 families)
   there are similar active site architectures as well as the catalytic mechanisms of functionally characterised members

5. Family c.23.14.1: N-deoxyribosyltransferase [52310] (2 proteins)

6. Protein Nucleoside 2-deoxyribosyltransferase [52311] (2 species)
   class II N-deoxyribosyltransferase

7. Species Lactobacillus leichmannii [TaxId:28039] [52312] (2 PDB entries)

8. Domain d1f8yb_: 1f8y B: [31396]
   complexed with 5-methyl-2'-deoxypseudouridine
   complexed with 5md

Details for d1f8yb_

PDB Entry: 1f8y, 2.4 Å

PDB Description: crystal structure analysis of nucleoside 2-deoxyribosyltransferase complexed with 5-methyl-2'-deoxypseudouridine

PDB Compounds: (B:) nucleoside 2-deoxyribosyltransferase

SCOPe Domain Sequences for d1f8yb_:

Sequence; same for both SEQRES and ATOM records:

>d1f8yb_ c.23.14.1 (B:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}
pkktiyfgagwftdrqnkaykeamealkenptidlensyvpldnqykgirvdehpeylhd
kvwatatynndlngiktndimlgvyipdeedvglgmelgyalsqgkyvllvipdedygkp
inlmswgvsdnvikmsqlkdfnfnkprfdfyegavy

Timeline for d1f8yb_:

• d1f8yb_ first appeared (with stable ids) in SCOP 1.55
  
• d1f8yb_ appears in SCOPe 2.03
  
• d1f8yb_ appears in SCOPe 2.05
  
• d1f8yb_ appears in the current release, SCOPe 2.08