Lineage for d1f8yb_ (1f8y B:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2101600Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
    3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
  4. 2103986Superfamily c.23.14: N-(deoxy)ribosyltransferase-like [52309] (4 families) (S)
    there are similar active site architectures as well as the catalytic mechanisms of functionally characterised members
  5. 2103987Family c.23.14.1: N-deoxyribosyltransferase [52310] (2 protein domains)
  6. 2103988Protein Nucleoside 2-deoxyribosyltransferase [52311] (2 species)
    class II N-deoxyribosyltransferase
  7. 2103989Species Lactobacillus leichmannii [TaxId:28039] [52312] (2 PDB entries)
  8. 2103991Domain d1f8yb_: 1f8y B: [31396]
    complexed with 5-methyl-2'-deoxypseudouridine
    complexed with 5md

Details for d1f8yb_

PDB Entry: 1f8y (more details), 2.4 Å

PDB Description: crystal structure analysis of nucleoside 2-deoxyribosyltransferase complexed with 5-methyl-2'-deoxypseudouridine
PDB Compounds: (B:) nucleoside 2-deoxyribosyltransferase

SCOPe Domain Sequences for d1f8yb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1f8yb_ c.23.14.1 (B:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

SCOPe Domain Coordinates for d1f8yb_:

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Timeline for d1f8yb_: