SCOPe 2.06: Domain d5d4yb_: 5d4y B:

Lineage for d5d4yb_ (5d4y B:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.0: automated matches [191314] (1 protein)
   not a true family

6. Protein automated matches [190075] (90 species)
   not a true protein

7. Species Capra hircus [TaxId:9925] [313362] (1 PDB entry)

8. Domain d5d4yb_: 5d4y B: [313376]
   automated match to d2depb_

Details for d5d4yb_

PDB Entry: 5d4y

PDB Description: a psychrophilic glycoside hydrolase family 10 endo-beta-1,4-xylanase

PDB Compounds: (B:) xylanase

SCOPe Domain Sequences for d5d4yb_:

Sequence, based on SEQRES records:

>d5d4yb_ c.1.8.0 (B:) automated matches {Capra hircus [TaxId: 9925]}
glkdaykdyfkigvavnnrnvadpdqikvvlrefnsitaenamkpqptepkkgefnweda
dkiadfcrangikmrghtlmwhsqigswmyqdekgnllskeefyanmkhhiqaivnrykd
vvycwdvvneavadspvypgrpelrnspmyqiageefiykafeyaheadpdallfyndyn
daepaksqriynlvkrmkdagvpidgigmqahynvygptmkevddaiklystvvdhihlt
eldirinedmggglrfnqgqatvsdwertlqqdqyvqlfkvlrkhkdvidcvtfwnvsdk
dswlgvrnypllfdenykpkqaynavknf

Sequence, based on observed residues (ATOM records):

>d5d4yb_ c.1.8.0 (B:) automated matches {Capra hircus [TaxId: 9925]}
glkdaykdyfkigvavnnrnvadpdqikvvlrefnsitaenamkpqptepkkgefnweda
dkiadfcrangikmrghtlmwhsqigswmyqkgnllskeefyanmkhhiqaivnrykdvv
ycwdvvneavadspvypgrpelrnspmyqiageefiykafeyaheadpdallfyndynda
epaksqriynlvkrmkdagvpidgigmqahynvygptmkevddaiklystvvdhihltel
dirinvsdwertlqqdqyvqlfkvlrkhkdvidcvtfwnvsdkdswlgvrnypllfdeny
kpkqaynavknf

Timeline for d5d4yb_:

• d5d4yb_ is new in SCOPe 2.06-stable
  
• d5d4yb_ appears in SCOPe 2.07
  
• d5d4yb_ appears in the current release, SCOPe 2.08