SCOPe 2.08: Domain d5bpfc2: 5bpf C:97-306

Lineage for d5bpfc2 (5bpf C:97-306)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families)

5. Family d.142.1.0: automated matches [227184] (1 protein)
   not a true family

6. Protein automated matches [226904] (39 species)
   not a true protein

7. Species Yersinia pestis [TaxId:632] [280584] (5 PDB entries)

8. Domain d5bpfc2: 5bpf C:97-306 [312683]
   Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
   automated match to d1iova2
   complexed with act, adp, gol, na

Details for d5bpfc2

PDB Entry: 5bpf, 2.28 Å

PDB Description: crystal structure of adp complexed d-alanine-d-alanine ligase(ddl) from yersinia pestis

PDB Compounds: (C:) D-alanine-D-alanine ligase

SCOPe Domain Sequences for d5bpfc2:

Sequence; same for both SEQRES and ATOM records:

>d5bpfc2 d.142.1.0 (C:97-306) automated matches {Yersinia pestis [TaxId: 632]}
klrtklvwqalglpispyvalnrqqfetlspeelvacvaklglplivkpshegssvgmsk
vdhaselqkalveafqhdsdvliekwlsgpeftvailgdevlpsiriqppgvfydydaky
lsdktqyfcpsglsdeseqqlaalalqayhaldcsgwgrvdvmqdrdghfyllevntspg
mtshslvpmaarqyglsfsqlvarilmlad

Timeline for d5bpfc2:

• d5bpfc2 first appeared in SCOPe 2.06
  
• d5bpfc2 appears in SCOPe 2.07