Lineage for d5bpfa2 (5bpf A:97-306)

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2585054Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2585055Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (11 families) (S)
  5. 2585592Family d.142.1.0: automated matches [227184] (1 protein)
    not a true family
  6. 2585593Protein automated matches [226904] (38 species)
    not a true protein
  7. 2585802Species Yersinia pestis [TaxId:632] [280584] (5 PDB entries)
  8. 2585811Domain d5bpfa2: 5bpf A:97-306 [312667]
    Other proteins in same PDB: d5bpfa1, d5bpfb1, d5bpfc1, d5bpfd1
    automated match to d1iova2
    complexed with act, adp, gol, na

Details for d5bpfa2

PDB Entry: 5bpf (more details), 2.28 Å

PDB Description: crystal structure of adp complexed d-alanine-d-alanine ligase(ddl) from yersinia pestis
PDB Compounds: (A:) D-alanine-D-alanine ligase

SCOPe Domain Sequences for d5bpfa2:

Sequence, based on SEQRES records: (download)

>d5bpfa2 d.142.1.0 (A:97-306) automated matches {Yersinia pestis [TaxId: 632]}
klrtklvwqalglpispyvalnrqqfetlspeelvacvaklglplivkpshegssvgmsk
vdhaselqkalveafqhdsdvliekwlsgpeftvailgdevlpsiriqppgvfydydaky
lsdktqyfcpsglsdeseqqlaalalqayhaldcsgwgrvdvmqdrdghfyllevntspg
mtshslvpmaarqyglsfsqlvarilmlad

Sequence, based on observed residues (ATOM records): (download)

>d5bpfa2 d.142.1.0 (A:97-306) automated matches {Yersinia pestis [TaxId: 632]}
klrtklvwqalglpispyvalnrqqfetlspeelvacvaklglplivkpshesvgmskvd
haselqkalveafqhdsdvliekwlsgpeftvailgdevlpsiriqppktqyfcpsglsd
eseqqlaalalqayhaldcsgwgrvdvmqdrdghfyllevntspgmtshslvpmaarqyg
lsfsqlvarilmlad

SCOPe Domain Coordinates for d5bpfa2:

Click to download the PDB-style file with coordinates for d5bpfa2.
(The format of our PDB-style files is described here.)

Timeline for d5bpfa2: