SCOPe Funding Alert: SCOPe support from the NIH ended in April 2016. John-Marc Chandonia is the primary maintainer and has continued to develop SCOPe using vacation time. Three proposals to the NIH for continued funding have been unsuccessful. If our current NIH proposal is not funded, SCOPe will shut down permanently in Summer 2017 as Dr. Chandonia will need to seek a new position.

Lineage for Species: Pyrococcus abyssi [TaxId: 272844]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2149822Fold c.110: DTD-like [69499] (1 superfamily)
    beta(2)-(alpha-beta)2-beta(3); 3 layers, a/b/b; some topological similarity to the N-terminal domain of MinC
  4. 2149823Superfamily c.110.1: DTD-like [69500] (3 families) (S)
    active form is a dimer
  5. 2149839Family c.110.1.2: Archaea-specific editing domain of threonyl-tRNA synthetase (Pab-NTD) [310661] (2 protein domains)
    Pfam PF08915
  6. 2149847Protein automated matches [310853] (2 species)
    not a true protein
  7. 2149848Species Pyrococcus abyssi [TaxId:272844] [311435] (8 PDB entries)

PDB entries in Species: Pyrococcus abyssi [TaxId: 272844]:

  1. Domain(s) for 4rrq:
    1. 2149849Domain d4rrqa_: 4rrq A: [309518]
      automated match to d1y2qa_
      complexed with a3s; mutant
    2. 2149850Domain d4rrqb_: 4rrq B: [309519]
      automated match to d1y2qa_
      complexed with a3s; mutant
  2. Domain(s) for 4rrr:
    1. 2149851Domain d4rrra_: 4rrr A: [309520]
      automated match to d1y2qa_
      complexed with a3t; mutant
    2. 2149852Domain d4rrrb_: 4rrr B: [309521]
      automated match to d1y2qa_
      complexed with a3t; mutant
  3. Domain(s) for 4s02:
  4. Domain(s) for 4s03:
  5. Domain(s) for 4s0i:
  6. Domain(s) for 4s0j:
  7. Domain(s) for 4s0k:
  8. Domain(s) for 4s0l:

More info for Species Pyrococcus abyssi [TaxId:272844] from c.110.1.2 automated matches

Timeline for Species Pyrococcus abyssi [TaxId:272844] from c.110.1.2 automated matches:

  • Species Pyrococcus abyssi [TaxId:272844] from c.110.1.2 automated matches is new in SCOPe 2.06-stable