Lineage for Species: Human betacoronavirus 2c jordan-n3/2012 [TaxId: 1306931]

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2154577Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2154578Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2155396Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 protein domains)
    C-terminal part of Pfam PF08715
  6. 2155397Protein Papain-like protease PLpro, catalytic domain [310795] (3 species)
  7. 2155402Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] [311427] (5 PDB entries)

PDB entries in Species: Human betacoronavirus 2c jordan-n3/2012 [TaxId: 1306931]:

  1. Domain(s) for 4rez:
  2. Domain(s) for 4rf0:
  3. Domain(s) for 4rf1:
  4. Domain(s) for 5w8t:
    1. 2296383Domain d5w8ta2: 5w8t A:62-320 [339684]
      Other proteins in same PDB: d5w8ta1, d5w8tb_, d5w8tc1, d5w8td_
      automated match to d4pt5a2
      complexed with aye, mpd, zn
    2. 2296385Domain d5w8tc2: 5w8t C:62-320 [339686]
      Other proteins in same PDB: d5w8ta1, d5w8tb_, d5w8tc1, d5w8td_
      automated match to d4pt5a2
      complexed with aye, mpd, zn
  5. Domain(s) for 5w8u:
    1. 2296381Domain d5w8uc2: 5w8u C:62-320 [339682]
      Other proteins in same PDB: d5w8ua1, d5w8ub_, d5w8uc1, d5w8ud_
      automated match to d4pt5a2
      complexed with aye, mpd, zn
    2. 2296388Domain d5w8ua2: 5w8u A:62-320 [339689]
      Other proteins in same PDB: d5w8ua1, d5w8ub_, d5w8uc1, d5w8ud_
      automated match to d4pt5a2
      complexed with aye, mpd, zn

More info for Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] from d.3.1.23 Papain-like protease PLpro, catalytic domain

Timeline for Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] from d.3.1.23 Papain-like protease PLpro, catalytic domain:

  • Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] from d.3.1.23 Papain-like protease PLpro, catalytic domain is new in SCOPe 2.06-stable