Lineage for Species: Pyrococcus abyssi [TaxId: 29292]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2149822Fold c.110: DTD-like [69499] (1 superfamily)
    beta(2)-(alpha-beta)2-beta(3); 3 layers, a/b/b; some topological similarity to the N-terminal domain of MinC
  4. 2149823Superfamily c.110.1: DTD-like [69500] (3 families) (S)
    active form is a dimer
  5. 2149839Family c.110.1.2: Archaea-specific editing domain of threonyl-tRNA synthetase (Pab-NTD) [310661] (2 protein domains)
    Pfam PF08915
  6. 2149847Protein automated matches [310853] (2 species)
    not a true protein
  7. 2149859Species Pyrococcus abyssi [TaxId:29292] [311214] (5 PDB entries)

PDB entries in Species: Pyrococcus abyssi [TaxId: 29292]:

  1. Domain(s) for 2hl1:
    1. 2149864Domain d2hl1a_: 2hl1 A: [304024]
      automated match to d1y2qa_
      protein/RNA complex; complexed with a3s
    2. 2149865Domain d2hl1b_: 2hl1 B: [304025]
      automated match to d1y2qa_
      protein/RNA complex; complexed with a3s
  2. Domain(s) for 3pd2:
    1. 2149862Domain d3pd2a_: 3pd2 A: [306226]
      automated match to d1y2qa_
      protein/RNA complex; complexed with a3s
    2. 2149863Domain d3pd2b_: 3pd2 B: [306227]
      automated match to d1y2qa_
      protein/RNA complex; complexed with a3s
  3. Domain(s) for 3pd3:
    1. 2149860Domain d3pd3a_: 3pd3 A: [306228]
      automated match to d1y2qa_
      protein/RNA complex; complexed with a3t
    2. 2149861Domain d3pd3b_: 3pd3 B: [306229]
      automated match to d1y2qa_
      protein/RNA complex; complexed with a3t
  4. Domain(s) for 3pd4:
    1. 2149868Domain d3pd4a_: 3pd4 A: [306230]
      automated match to d1y2qa_
      protein/RNA complex; complexed with a3g
    2. 2149869Domain d3pd4b_: 3pd4 B: [306231]
      automated match to d1y2qa_
      protein/RNA complex; complexed with a3g
  5. Domain(s) for 3pd5:
    1. 2149866Domain d3pd5a_: 3pd5 A: [306232]
      automated match to d1y2qa_
      protein/RNA complex; complexed with gol, tsb
    2. 2149867Domain d3pd5b_: 3pd5 B: [306233]
      automated match to d1y2qa_
      protein/RNA complex; complexed with gol, tsb

More info for Species Pyrococcus abyssi [TaxId:29292] from c.110.1.2 automated matches

Timeline for Species Pyrococcus abyssi [TaxId:29292] from c.110.1.2 automated matches:

  • Species Pyrococcus abyssi [TaxId:29292] from c.110.1.2 automated matches is new in SCOPe 2.06-stable