Class d: Alpha and beta proteins (a+b) [53931] (385 folds) |
Fold d.3: Cysteine proteinases [54000] (1 superfamily) consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn |
Superfamily d.3.1: Cysteine proteinases [54001] (24 families) the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet |
Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 proteins) C-terminal part of Pfam PF08715 |
Protein automated matches [310868] (5 species) not a true protein |
Betacoronavirus england 1 [TaxId:1263720] [311420] (1 PDB entry) |
Domain d4r3da2: 4r3d A:63-326 [309356] Other proteins in same PDB: d4r3da1, d4r3db1 automated match to d4p16a2 complexed with zn |
Domain d4r3db2: 4r3d B:63-326 [309358] Other proteins in same PDB: d4r3da1, d4r3db1 automated match to d4p16a2 complexed with zn |
Human coronavirus emc [TaxId:1263720] [311464] (1 PDB entry) |
Domain d4wura2: 4wur A:62-319 [301220] Other proteins in same PDB: d4wura1, d4wurb_ automated match to d4p16a2 complexed with ipa, zn |
Human sars coronavirus [TaxId:227859] [333837] (1 PDB entry) |
Domain d5tl6b2: 5tl6 B:63-316 [333841] Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1 automated match to d2fe8a2 complexed with so4, zn |
Domain d5tl6d2: 5tl6 D:63-316 [333838] Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1 automated match to d2fe8a2 complexed with so4, zn |
SARS coronavirus [TaxId:227859] [311282] (4 PDB entries) |
Domain d3e9sa2: 3e9s A:63-315 [305253] Other proteins in same PDB: d3e9sa1, d3e9sa3 automated match to d2fe8a2 complexed with cl, ttt, zn |
Domain d4m0wa2: 4m0w A:63-319 [299381] Other proteins in same PDB: d4m0wa1, d4m0wb_ automated match to d2fe8a2 complexed with gol, na, nhe, zn; mutant |
Domain d4mm3b2: 4mm3 B:63-316 [299532] Other proteins in same PDB: d4mm3a_, d4mm3b1 automated match to d2fe8a2 complexed with zn |
Domain d5tl7b2: 5tl7 B:63-316 [333881] Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1 automated match to d2fe8a2 complexed with zn |
Domain d5tl7d2: 5tl7 D:63-316 [333892] Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1 automated match to d2fe8a2 complexed with zn |
Sars coronavirus [TaxId:228330] [311412] (2 PDB entries) |
Domain d4ovza2: 4ovz A:63-313 [307962] Other proteins in same PDB: d4ovza1 automated match to d2fe8a2 complexed with dms, na, p85, zn |
Domain d4ow0a2: 4ow0 A:63-315 [307964] Other proteins in same PDB: d4ow0a1 automated match to d2fe8a2 complexed with dms, gol, s88, zn |
Timeline for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain: