Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2926589Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2926590Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2927545Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 proteins)
    C-terminal part of Pfam PF08715
  6. 2927569Protein automated matches [310868] (6 species)
    not a true protein

Species:

  1. 2927570Betacoronavirus england 1 [TaxId:1263720] [311420] (1 PDB entry)
  2. 2927573Human coronavirus emc [TaxId:1263720] [311464] (1 PDB entry)
  3. 2927575Human sars coronavirus [TaxId:227859] [333837] (3 PDB entries)
    1. Domains for 5tl6:
      1. 2927578Domain d5tl6b2: 5tl6 B:63-316 [333841]
        Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1
        automated match to d2fe8a2
        complexed with so4, zn
      2. 2927579Domain d5tl6d2: 5tl6 D:63-316 [333838]
        Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1
        automated match to d2fe8a2
        complexed with so4, zn
    2. Domain for 5y3e:
    3. Domain for 5y3q:
  4. 2927580SARS coronavirus [TaxId:227859] [311282] (4 PDB entries)
    1. Domain for 3e9s:
    2. Domain for 4m0w:
    3. Domain for 4mm3:
    4. Domains for 5tl7:
      1. 2927583Domain d5tl7b2: 5tl7 B:63-316 [333881]
        Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1
        automated match to d2fe8a2
        complexed with zn
      2. 2927584Domain d5tl7d2: 5tl7 D:63-316 [333892]
        Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1
        automated match to d2fe8a2
        complexed with zn
  5. 2927586Sars coronavirus [TaxId:228330] [311412] (2 PDB entries)
    1. Domain for 4ovz:
    2. Domain for 4ow0:
  6. 2927589Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [385225] (34 PDB entries)
    1. Domain for 6wrh:
    2. Domain for 6wzu:
    3. Domains for 6xa9:
      1. 2927629Domain d6xa9a2: 6xa9 A:62-314 [388066]
        Other proteins in same PDB: d6xa9a1, d6xa9b_, d6xa9c1, d6xa9d_, d6xa9e1, d6xa9f_
        automated match to d2fe8a2
        complexed with gol, zn
      2. 2927630Domain d6xa9c2: 6xa9 C:62-314 [388046]
        Other proteins in same PDB: d6xa9a1, d6xa9b_, d6xa9c1, d6xa9d_, d6xa9e1, d6xa9f_
        automated match to d2fe8a2
        complexed with gol, zn
      3. 2927631Domain d6xa9e2: 6xa9 E:62-313 [388094]
        Other proteins in same PDB: d6xa9a1, d6xa9b_, d6xa9c1, d6xa9d_, d6xa9e1, d6xa9f_
        automated match to d2fe8a2
        complexed with gol, zn
    4. Domain for 6xaa:
    5. Domain for 6xg3:
    6. Domain for 6yva:
    7. Domains for 7cjd:
      1. 2927620Domain d7cjda2: 7cjd A:62-312 [389947]
        Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1
        automated match to d4m0wa2
        complexed with edo, zn; mutant
      2. 2927621Domain d7cjdb2: 7cjd B:62-312 [389971]
        Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1
        automated match to d4m0wa2
        complexed with edo, zn; mutant
      3. 2927622Domain d7cjdc2: 7cjd C:62-312 [389962]
        Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1
        automated match to d4m0wa2
        complexed with edo, zn; mutant
      4. 2927623Domain d7cjdd2: 7cjd D:62-313 [389934]
        Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1
        automated match to d4m0wa2
        complexed with edo, zn; mutant
    8. Domains for 7cmd:
      1. 2927625Domain d7cmda2: 7cmd A:62-315 [390002]
        Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3
        automated match to d4m0wa2
        complexed with ttt, zn
      2. 2927626Domain d7cmdb2: 7cmd B:62-315 [389993]
        Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3
        automated match to d4m0wa2
        complexed with ttt, zn
      3. 2927627Domain d7cmdc2: 7cmd C:62-314 [390097]
        Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3
        automated match to d4m0wa2
        complexed with ttt, zn
      4. 2927628Domain d7cmdd2: 7cmd D:62-315 [390026]
        Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3
        automated match to d4m0wa2
        complexed with ttt, zn
    9. Domains for 7d47:
      1. 2927599Domain d7d47a2: 7d47 A:62-316 [390100]
        Other proteins in same PDB: d7d47a1, d7d47b1
        automated match to d4m0wa2
        complexed with ca, zn
      2. 2927600Domain d7d47b2: 7d47 B:62-315 [390090]
        Other proteins in same PDB: d7d47a1, d7d47b1
        automated match to d4m0wa2
        complexed with ca, zn
    10. Domain for 7d6h:
    11. Domains for 7d7k:
      1. 2927593Domain d7d7ka2: 7d7k A:62-315 [403183]
        Other proteins in same PDB: d7d7ka1, d7d7kb1
        automated match to d4m0wa2
        complexed with cff, edo, so4, zn
      2. 2927594Domain d7d7kb2: 7d7k B:62-315 [403286]
        Other proteins in same PDB: d7d7ka1, d7d7kb1
        automated match to d4m0wa2
        complexed with cff, edo, so4, zn
    12. Domains for 7d7l:
      1. 2927605Domain d7d7la2: 7d7l A:62-315 [403209]
        Other proteins in same PDB: d7d7la1, d7d7lb1
        automated match to d4m0wa2
        complexed with cff, gol, gxu, so4, zn
      2. 2927606Domain d7d7lb2: 7d7l B:62-315 [403215]
        Other proteins in same PDB: d7d7la1, d7d7lb1
        automated match to d4m0wa2
        complexed with cff, gol, gxu, so4, zn
    13. Domains for 7e35:
      1. 2927614Domain d7e35a2: 7e35 A:63-316 [401980]
        Other proteins in same PDB: d7e35a1
        automated match to d4m0wa2
        complexed with gyx, zn; mutant
      2. 2927615Domain d7e35b1: 7e35 B:63-316 [401981]
        Other proteins in same PDB: d7e35a1
        automated match to d4m0wa2
        complexed with gyx, zn; mutant
    14. Domain for 7jir:
    15. Domain for 7jit:
    16. Domain for 7jiv:
    17. Domain for 7jiw:
    18. Domain for 7jn2:
    19. Domains for 7jrn:
      1. 2927617Domain d7jrna2: 7jrn A:62-315 [390295]
        Other proteins in same PDB: d7jrna1, d7jrnj1
        automated match to d2fe8a2
        complexed with so4, ttt, zn
      2. 2927618Domain d7jrnj2: 7jrn J:62-315 [390299]
        Other proteins in same PDB: d7jrna1, d7jrnj1
        automated match to d2fe8a2
        complexed with so4, ttt, zn
    20. Domain for 7koj:
    21. Domain for 7kok:
    22. Domain for 7kol:
    23. Domain for 7krx:
    24. Domains for 7lbr:
      1. 2927609Domain d7lbra2: 7lbr A:62-315 [399508]
        Other proteins in same PDB: d7lbra1, d7lbra3, d7lbrb1, d7lbrb3
        automated match to d2fe8a2
        complexed with gol, so4, xt7, zn
      2. 2927610Domain d7lbrb2: 7lbr B:62-315 [399496]
        Other proteins in same PDB: d7lbra1, d7lbra3, d7lbrb1, d7lbrb3
        automated match to d2fe8a2
        complexed with gol, so4, xt7, zn
    25. Domains for 7lbs:
      1. 2927633Domain d7lbsa2: 7lbs A:62-315 [399473]
        Other proteins in same PDB: d7lbsa1, d7lbsa3, d7lbsb1, d7lbsb3
        automated match to d2fe8a2
        complexed with bo3, gol, so4, xr8, zn
      2. 2927634Domain d7lbsb2: 7lbs B:62-315 [399493]
        Other proteins in same PDB: d7lbsa1, d7lbsa3, d7lbsb1, d7lbsb3
        automated match to d2fe8a2
        complexed with bo3, gol, so4, xr8, zn
    26. Domains for 7llf:
      1. 2927611Domain d7llfa2: 7llf A:62-315 [399949]
        Other proteins in same PDB: d7llfa1, d7llfa3, d7llfb1, d7llfb3
        automated match to d2fe8a2
        complexed with bo3, gol, so4, y54, zn
      2. 2927612Domain d7llfb2: 7llf B:62-315 [399915]
        Other proteins in same PDB: d7llfa1, d7llfa3, d7llfb1, d7llfb3
        automated match to d2fe8a2
        complexed with bo3, gol, so4, y54, zn
    27. Domains for 7llz:
      1. 2927635Domain d7llza2: 7llz A:62-315 [399909]
        Other proteins in same PDB: d7llza1, d7llza3, d7llzb1, d7llzb3
        automated match to d2fe8a2
        complexed with so4, y61, zn
      2. 2927636Domain d7llzb2: 7llz B:62-315 [399821]
        Other proteins in same PDB: d7llza1, d7llza3, d7llzb1, d7llzb3
        automated match to d2fe8a2
        complexed with so4, y61, zn
    28. Domains for 7los:
      1. 2927637Domain d7losa2: 7los A:62-315 [399865]
        Other proteins in same PDB: d7losa1, d7losa3, d7losb1, d7losb3
        automated match to d2fe8a2
        complexed with cl, so4, y97, zn
      2. 2927638Domain d7losb2: 7los B:62-315 [399741]
        Other proteins in same PDB: d7losa1, d7losa3, d7losb1, d7losb3
        automated match to d2fe8a2
        complexed with cl, so4, y97, zn
    29. Domains for 7m1y:
      1. 2927602Domain d7m1ya2: 7m1y A:62-315 [402370]
        Other proteins in same PDB: d7m1ya1, d7m1yb1
        automated match to d4m0wa2
        complexed with 9jt, cl, fmt, gol, iod, na, zn; mutant
      2. 2927603Domain d7m1yb2: 7m1y B:62-314 [402364]
        Other proteins in same PDB: d7m1ya1, d7m1yb1
        automated match to d4m0wa2
        complexed with 9jt, cl, fmt, gol, iod, na, zn; mutant
    30. Domain for 7ofs:
    31. Domain for 7oft:
    32. Domain for 7qcg:
    33. Domains for 7rbs:
      1. 3085839Domain d7rbsg2: 7rbs G:62-314 [422156]
        Other proteins in same PDB: d7rbsa1, d7rbsb1, d7rbsb2, d7rbsb3, d7rbsc1, d7rbsd1, d7rbsd2, d7rbsd3, d7rbse1, d7rbsf1, d7rbsf2, d7rbsf3, d7rbsg1, d7rbsh1, d7rbsh2, d7rbsh3, d7rbsi1, d7rbsj1, d7rbsj2, d7rbsj3
        automated match to d7d6ha2
        complexed with zn; mutant
      2. 3085841Domain d7rbsa2: 7rbs A:62-314 [422158]
        Other proteins in same PDB: d7rbsa1, d7rbsb1, d7rbsb2, d7rbsb3, d7rbsc1, d7rbsd1, d7rbsd2, d7rbsd3, d7rbse1, d7rbsf1, d7rbsf2, d7rbsf3, d7rbsg1, d7rbsh1, d7rbsh2, d7rbsh3, d7rbsi1, d7rbsj1, d7rbsj2, d7rbsj3
        automated match to d7d6ha2
        complexed with zn; mutant
      3. 3085880Domain d7rbsi2: 7rbs I:62-314 [422197]
        Other proteins in same PDB: d7rbsa1, d7rbsb1, d7rbsb2, d7rbsb3, d7rbsc1, d7rbsd1, d7rbsd2, d7rbsd3, d7rbse1, d7rbsf1, d7rbsf2, d7rbsf3, d7rbsg1, d7rbsh1, d7rbsh2, d7rbsh3, d7rbsi1, d7rbsj1, d7rbsj2, d7rbsj3
        automated match to d7d6ha2
        complexed with zn; mutant
      4. 3085913Domain d7rbse2: 7rbs E:62-314 [422230]
        Other proteins in same PDB: d7rbsa1, d7rbsb1, d7rbsb2, d7rbsb3, d7rbsc1, d7rbsd1, d7rbsd2, d7rbsd3, d7rbse1, d7rbsf1, d7rbsf2, d7rbsf3, d7rbsg1, d7rbsh1, d7rbsh2, d7rbsh3, d7rbsi1, d7rbsj1, d7rbsj2, d7rbsj3
        automated match to d7d6ha2
        complexed with zn; mutant
      5. 3085955Domain d7rbsc2: 7rbs C:62-314 [422272]
        Other proteins in same PDB: d7rbsa1, d7rbsb1, d7rbsb2, d7rbsb3, d7rbsc1, d7rbsd1, d7rbsd2, d7rbsd3, d7rbse1, d7rbsf1, d7rbsf2, d7rbsf3, d7rbsg1, d7rbsh1, d7rbsh2, d7rbsh3, d7rbsi1, d7rbsj1, d7rbsj2, d7rbsj3
        automated match to d7d6ha2
        complexed with zn; mutant
    34. Domain for 7uv5:

More info for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain

Timeline for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain: