Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2497139Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2497140Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2498013Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 proteins)
    C-terminal part of Pfam PF08715
  6. 2498033Protein automated matches [310868] (6 species)
    not a true protein

Species:

  1. 2498034Betacoronavirus england 1 [TaxId:1263720] [311420] (1 PDB entry)
  2. 2498037Human coronavirus emc [TaxId:1263720] [311464] (1 PDB entry)
  3. 2498039Human sars coronavirus [TaxId:227859] [333837] (3 PDB entries)
    1. Domains for 5tl6:
      1. 2498040Domain d5tl6b2: 5tl6 B:63-316 [333841]
        Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1
        automated match to d2fe8a2
        complexed with so4, zn
      2. 2498041Domain d5tl6d2: 5tl6 D:63-316 [333838]
        Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1
        automated match to d2fe8a2
        complexed with so4, zn
    2. Domain for 5y3e:
    3. Domain for 5y3q:
  4. 2498042SARS coronavirus [TaxId:227859] [311282] (4 PDB entries)
    1. Domain for 3e9s:
    2. Domain for 4m0w:
    3. Domain for 4mm3:
    4. Domains for 5tl7:
      1. 2498045Domain d5tl7b2: 5tl7 B:63-316 [333881]
        Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1
        automated match to d2fe8a2
        complexed with zn
      2. 2498046Domain d5tl7d2: 5tl7 D:63-316 [333892]
        Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1
        automated match to d2fe8a2
        complexed with zn
  5. 2498048Sars coronavirus [TaxId:228330] [311412] (2 PDB entries)
    1. Domain for 4ovz:
    2. Domain for 4ow0:
  6. 3085163Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [385225] (21 PDB entries)
    1. Domain for 6wrh:
    2. Domain for 6wzu:
    3. Domains for 6xa9:
      1. 3087984Domain d6xa9c2: 6xa9 C:62-314 [388046]
        Other proteins in same PDB: d6xa9a1, d6xa9b_, d6xa9c1, d6xa9d_, d6xa9e1, d6xa9f_
        automated match to d2fe8a2
        complexed with gol, zn
      2. 3088004Domain d6xa9a2: 6xa9 A:62-314 [388066]
        Other proteins in same PDB: d6xa9a1, d6xa9b_, d6xa9c1, d6xa9d_, d6xa9e1, d6xa9f_
        automated match to d2fe8a2
        complexed with gol, zn
      3. 3088032Domain d6xa9e2: 6xa9 E:62-313 [388094]
        Other proteins in same PDB: d6xa9a1, d6xa9b_, d6xa9c1, d6xa9d_, d6xa9e1, d6xa9f_
        automated match to d2fe8a2
        complexed with gol, zn
    4. Domain for 6xaa:
    5. Domain for 6xg3:
    6. Domain for 6yva:
    7. Domains for 7cjd:
      1. 3089872Domain d7cjdd2: 7cjd D:62-313 [389934]
        Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1
        automated match to d4m0wa2
        complexed with edo, zn; mutant
      2. 3089885Domain d7cjda2: 7cjd A:62-312 [389947]
        Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1
        automated match to d4m0wa2
        complexed with edo, zn; mutant
      3. 3089900Domain d7cjdc2: 7cjd C:62-312 [389962]
        Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1
        automated match to d4m0wa2
        complexed with edo, zn; mutant
      4. 3089909Domain d7cjdb2: 7cjd B:62-312 [389971]
        Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1
        automated match to d4m0wa2
        complexed with edo, zn; mutant
    8. Domains for 7cmd:
      1. 3089931Domain d7cmdb2: 7cmd B:62-315 [389993]
        Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3
        automated match to d4m0wa2
        complexed with ttt, zn
      2. 3089940Domain d7cmda2: 7cmd A:62-315 [390002]
        Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3
        automated match to d4m0wa2
        complexed with ttt, zn
      3. 3089964Domain d7cmdd2: 7cmd D:62-315 [390026]
        Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3
        automated match to d4m0wa2
        complexed with ttt, zn
      4. 3090035Domain d7cmdc2: 7cmd C:62-314 [390097]
        Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3
        automated match to d4m0wa2
        complexed with ttt, zn
    9. Domains for 7d47:
      1. 3090028Domain d7d47b2: 7d47 B:62-315 [390090]
        Other proteins in same PDB: d7d47a1, d7d47b1
        automated match to d4m0wa2
        complexed with ca, zn
      2. 3090038Domain d7d47a2: 7d47 A:62-316 [390100]
        Other proteins in same PDB: d7d47a1, d7d47b1
        automated match to d4m0wa2
        complexed with ca, zn
    10. Domain for 7d6h:
    11. Domains for 7d7t:
      1. 3094435Domain d7d7tb2: 7d7t B:63-316 [394497]
        Other proteins in same PDB: d7d7ta1, d7d7tb1
        automated match to d4m0wa2
        complexed with gyx, zn; mutant
      2. 3094439Domain d7d7ta2: 7d7t A:63-316 [394501]
        Other proteins in same PDB: d7d7ta1, d7d7tb1
        automated match to d4m0wa2
        complexed with gyx, zn; mutant
    12. Domain for 7jir:
    13. Domain for 7jit:
    14. Domain for 7jiv:
    15. Domain for 7jiw:
    16. Domain for 7jn2:
    17. Domains for 7jrn:
      1. 3090233Domain d7jrna2: 7jrn A:62-315 [390295]
        Other proteins in same PDB: d7jrna1, d7jrnj1
        automated match to d2fe8a2
        complexed with so4, ttt, zn
      2. 3090237Domain d7jrnj2: 7jrn J:62-315 [390299]
        Other proteins in same PDB: d7jrna1, d7jrnj1
        automated match to d2fe8a2
        complexed with so4, ttt, zn
    18. Domain for 7koj:
    19. Domain for 7kok:
    20. Domain for 7kol:
    21. Domain for 7krx:

More info for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain

Timeline for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain: