Lineage for Protein: automated matches
- Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds) 
Fold d.3: Cysteine proteinases [54000] (1 superfamily)
consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-AsnSuperfamily d.3.1: Cysteine proteinases [54001] (24 families) 
the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 protein domains)
C-terminal part of Pfam PF08715Protein automated matches [310868] (5 species)
not a true protein
Species:
Betacoronavirus england 1 [TaxId:1263720] [311420] (1 PDB entry) - Domains for 4r3d:
Domain d4r3da2: 4r3d A:63-326 [309356]
Other proteins in same PDB: d4r3da1, d4r3db1
automated match to d4p16a2
complexed with zn
Domain d4r3db2: 4r3d B:63-326 [309358]
Other proteins in same PDB: d4r3da1, d4r3db1
automated match to d4p16a2
complexed with zn
- Domains for 4r3d:
Human coronavirus emc [TaxId:1263720] [311464] (1 PDB entry) - Domain for 4wur:
Domain d4wura2: 4wur A:62-319 [301220]
Other proteins in same PDB: d4wura1, d4wurb_
automated match to d4p16a2
complexed with ipa, zn
- Domain for 4wur:
Human sars coronavirus [TaxId:227859] [333837] (3 PDB entries) - Domains for 5tl6:
Domain d5tl6b2: 5tl6 B:63-316 [333841]
Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1
automated match to d2fe8a2
complexed with so4, zn
Domain d5tl6d2: 5tl6 D:63-316 [333838]
Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1
automated match to d2fe8a2
complexed with so4, zn
- Domain for 5y3e:
Domain d5y3ea2: 5y3e A:63-315 [348688]
Other proteins in same PDB: d5y3ea1, d5y3ea3
automated match to d2fe8a2
complexed with gol, na, zn
- Domain for 5y3q:
Domain d5y3qa2: 5y3q A:63-315 [348676]
Other proteins in same PDB: d5y3qa1, d5y3qa3
automated match to d2fe8a2
complexed with bme, gol, na, zn
- Domains for 5tl6:
SARS coronavirus [TaxId:227859] [311282] (4 PDB entries) - Domain for 3e9s:
Domain d3e9sa2: 3e9s A:63-315 [305253]
Other proteins in same PDB: d3e9sa1, d3e9sa3
automated match to d2fe8a2
complexed with cl, ttt, zn
- Domain for 4m0w:
Domain d4m0wa2: 4m0w A:63-319 [299381]
Other proteins in same PDB: d4m0wa1, d4m0wb_
automated match to d2fe8a2
complexed with gol, na, nhe, zn; mutant
- Domain for 4mm3:
Domain d4mm3b2: 4mm3 B:63-316 [299532]
Other proteins in same PDB: d4mm3a_, d4mm3b1, d4mm3b3
automated match to d2fe8a2
complexed with zn
- Domains for 5tl7:
Domain d5tl7b2: 5tl7 B:63-316 [333881]
Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1
automated match to d2fe8a2
complexed with zn
Domain d5tl7d2: 5tl7 D:63-316 [333892]
Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1
automated match to d2fe8a2
complexed with zn
- Domain for 3e9s:
Sars coronavirus [TaxId:228330] [311412] (2 PDB entries) - Domain for 4ovz:
Domain d4ovza2: 4ovz A:63-313 [307962]
Other proteins in same PDB: d4ovza1
automated match to d2fe8a2
complexed with dms, na, p85, zn
- Domain for 4ow0:
Domain d4ow0a2: 4ow0 A:63-315 [307964]
Other proteins in same PDB: d4ow0a1
automated match to d2fe8a2
complexed with dms, gol, s88, zn
- Domain for 4ovz:
More info for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain
Timeline for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain:
- Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain first appeared in SCOPe 2.06