Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2497139Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2497140Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2498013Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 protein domains)
    C-terminal part of Pfam PF08715
  6. 2498033Protein automated matches [310868] (5 species)
    not a true protein

Species:

  1. 2498034Betacoronavirus england 1 [TaxId:1263720] [311420] (1 PDB entry)
  2. 2498037Human coronavirus emc [TaxId:1263720] [311464] (1 PDB entry)
  3. 2498039Human sars coronavirus [TaxId:227859] [333837] (3 PDB entries)
    1. Domains for 5tl6:
      1. 2498040Domain d5tl6b2: 5tl6 B:63-316 [333841]
        Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1
        automated match to d2fe8a2
        complexed with so4, zn
      2. 2498041Domain d5tl6d2: 5tl6 D:63-316 [333838]
        Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1
        automated match to d2fe8a2
        complexed with so4, zn
    2. Domain for 5y3e:
    3. Domain for 5y3q:
  4. 2498042SARS coronavirus [TaxId:227859] [311282] (4 PDB entries)
    1. Domain for 3e9s:
    2. Domain for 4m0w:
    3. Domain for 4mm3:
    4. Domains for 5tl7:
      1. 2498045Domain d5tl7b2: 5tl7 B:63-316 [333881]
        Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1
        automated match to d2fe8a2
        complexed with zn
      2. 2498046Domain d5tl7d2: 5tl7 D:63-316 [333892]
        Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1
        automated match to d2fe8a2
        complexed with zn
  5. 2498048Sars coronavirus [TaxId:228330] [311412] (2 PDB entries)
    1. Domain for 4ovz:
    2. Domain for 4ow0:

More info for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain

Timeline for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain: