Species:

1. Betacoronavirus england 1 [TaxId:1263720] [311420] (1 PDB entry)

   • Domains for 4r3d:

     1. Domain d4r3da2: 4r3d A:63-326 [309356] Other proteins in same PDB: d4r3da1, d4r3db1 automated match to d4p16a2 complexed with zn

     2. Domain d4r3db2: 4r3d B:63-326 [309358] Other proteins in same PDB: d4r3da1, d4r3db1 automated match to d4p16a2 complexed with zn

2. Human coronavirus emc [TaxId:1263720] [311464] (1 PDB entry)

   • Domain for 4wur:

     • Domain d4wura2: 4wur A:62-319 [301220] Other proteins in same PDB: d4wura1, d4wurb_ automated match to d4p16a2 complexed with ipa, zn

3. Human sars coronavirus [TaxId:227859] [333837] (3 PDB entries)

   1. Domains for 5tl6:

      1. Domain d5tl6b2: 5tl6 B:63-316 [333841] Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1 automated match to d2fe8a2 complexed with so4, zn

      2. Domain d5tl6d2: 5tl6 D:63-316 [333838] Other proteins in same PDB: d5tl6a_, d5tl6b1, d5tl6c_, d5tl6d1 automated match to d2fe8a2 complexed with so4, zn

   2. Domain for 5y3e:

      • Domain d5y3ea2: 5y3e A:63-315 [348688] Other proteins in same PDB: d5y3ea1, d5y3ea3 automated match to d2fe8a2 complexed with gol, na, zn

   3. Domain for 5y3q:

      • Domain d5y3qa2: 5y3q A:63-315 [348676] Other proteins in same PDB: d5y3qa1, d5y3qa3 automated match to d2fe8a2 complexed with bme, gol, na, zn

4. SARS coronavirus [TaxId:227859] [311282] (4 PDB entries)

   1. Domain for 3e9s:

      • Domain d3e9sa2: 3e9s A:63-315 [305253] Other proteins in same PDB: d3e9sa1, d3e9sa3 automated match to d2fe8a2 complexed with cl, ttt, zn

   2. Domain for 4m0w:

      • Domain d4m0wa2: 4m0w A:63-319 [299381] Other proteins in same PDB: d4m0wa1, d4m0wb_ automated match to d2fe8a2 complexed with gol, na, nhe, zn; mutant

   3. Domain for 4mm3:

      • Domain d4mm3b2: 4mm3 B:63-316 [299532] Other proteins in same PDB: d4mm3a_, d4mm3b1, d4mm3b3 automated match to d2fe8a2 complexed with zn

   4. Domains for 5tl7:

      1. Domain d5tl7b2: 5tl7 B:63-316 [333881] Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1 automated match to d2fe8a2 complexed with zn

      2. Domain d5tl7d2: 5tl7 D:63-316 [333892] Other proteins in same PDB: d5tl7a_, d5tl7b1, d5tl7b3, d5tl7c_, d5tl7d1 automated match to d2fe8a2 complexed with zn

5. Sars coronavirus [TaxId:228330] [311412] (2 PDB entries)

   1. Domain for 4ovz:

      • Domain d4ovza2: 4ovz A:63-313 [307962] Other proteins in same PDB: d4ovza1 automated match to d2fe8a2 complexed with dms, na, p85, zn

   2. Domain for 4ow0:

      • Domain d4ow0a2: 4ow0 A:63-315 [307964] Other proteins in same PDB: d4ow0a1 automated match to d2fe8a2 complexed with dms, gol, s88, zn

6. Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [385225] (21 PDB entries)

   1. Domain for 6wrh:

      • Domain d6wrha2: 6wrh A:62-315 [385226] Other proteins in same PDB: d6wrha1, d6wrha3 automated match to d4m0wa2 complexed with cl, gol, po4, zn; mutant

   2. Domain for 6wzu:

      • Domain d6wzua2: 6wzu A:62-315 [386400] Other proteins in same PDB: d6wzua1 automated match to d2fe8a2 complexed with cl, gol, po4, zn

   3. Domains for 6xa9:

      1. Domain d6xa9c2: 6xa9 C:62-314 [388046] Other proteins in same PDB: d6xa9a1, d6xa9b_, d6xa9c1, d6xa9d_, d6xa9e1, d6xa9f_ automated match to d2fe8a2 complexed with gol, zn

      2. Domain d6xa9a2: 6xa9 A:62-314 [388066] Other proteins in same PDB: d6xa9a1, d6xa9b_, d6xa9c1, d6xa9d_, d6xa9e1, d6xa9f_ automated match to d2fe8a2 complexed with gol, zn

      3. Domain d6xa9e2: 6xa9 E:62-313 [388094] Other proteins in same PDB: d6xa9a1, d6xa9b_, d6xa9c1, d6xa9d_, d6xa9e1, d6xa9f_ automated match to d2fe8a2 complexed with gol, zn

   4. Domain for 6xaa:

      • Domain d6xaaa2: 6xaa A:62-313 [388048] Other proteins in same PDB: d6xaaa1, d6xaab_ automated match to d2fe8a2 complexed with zn

   5. Domain for 6xg3:

      • Domain d6xg3a2: 6xg3 A:62-314 [388388] Other proteins in same PDB: d6xg3a1 automated match to d4m0wa2 complexed with cl, po4, zn; mutant

   6. Domain for 6yva:

      • Domain d6yvaa2: 6yva A:62-308 [385720] Other proteins in same PDB: d6yvaa1, d6yvac1, d6yvac2 automated match to d4m0wa2

   7. Domains for 7cjd:

      1. Domain d7cjdd2: 7cjd D:62-313 [389934] Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1 automated match to d4m0wa2 complexed with edo, zn; mutant

      2. Domain d7cjda2: 7cjd A:62-312 [389947] Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1 automated match to d4m0wa2 complexed with edo, zn; mutant

      3. Domain d7cjdc2: 7cjd C:62-312 [389962] Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1 automated match to d4m0wa2 complexed with edo, zn; mutant

      4. Domain d7cjdb2: 7cjd B:62-312 [389971] Other proteins in same PDB: d7cjda1, d7cjdb1, d7cjdc1, d7cjdd1 automated match to d4m0wa2 complexed with edo, zn; mutant

   8. Domains for 7cmd:

      1. Domain d7cmdb2: 7cmd B:62-315 [389993] Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3 automated match to d4m0wa2 complexed with ttt, zn

      2. Domain d7cmda2: 7cmd A:62-315 [390002] Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3 automated match to d4m0wa2 complexed with ttt, zn

      3. Domain d7cmdd2: 7cmd D:62-315 [390026] Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3 automated match to d4m0wa2 complexed with ttt, zn

      4. Domain d7cmdc2: 7cmd C:62-314 [390097] Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3 automated match to d4m0wa2 complexed with ttt, zn

   9. Domains for 7d47:

      1. Domain d7d47b2: 7d47 B:62-315 [390090] Other proteins in same PDB: d7d47a1, d7d47b1 automated match to d4m0wa2 complexed with ca, zn

      2. Domain d7d47a2: 7d47 A:62-316 [390100] Other proteins in same PDB: d7d47a1, d7d47b1 automated match to d4m0wa2 complexed with ca, zn

   10. Domain for 7d6h:

       • Domain d7d6ha2: 7d6h A:63-316 [394516] Other proteins in same PDB: d7d6ha1 automated match to d4m0wa2 complexed with po4, zn; mutant

   11. Domains for 7d7t:

       1. Domain d7d7tb2: 7d7t B:63-316 [394497] Other proteins in same PDB: d7d7ta1, d7d7tb1 automated match to d4m0wa2 complexed with gyx, zn; mutant

       2. Domain d7d7ta2: 7d7t A:63-316 [394501] Other proteins in same PDB: d7d7ta1, d7d7tb1 automated match to d4m0wa2 complexed with gyx, zn; mutant

   12. Domain for 7jir:

       • Domain d7jira2: 7jir A:62-314 [390285] Other proteins in same PDB: d7jira1 automated match to d4m0wa2 complexed with act, cl, mes, ttt, zn; mutant

   13. Domain for 7jit:

       • Domain d7jita2: 7jit A:62-315 [390200] Other proteins in same PDB: d7jita1 automated match to d4m0wa2 complexed with act, cl, mes, y95, zn; mutant

   14. Domain for 7jiv:

       • Domain d7jiva2: 7jiv A:62-315 [390229] Other proteins in same PDB: d7jiva1 automated match to d4m0wa2 complexed with act, cl, mes, vby, zn; mutant

   15. Domain for 7jiw:

       • Domain d7jiwa2: 7jiw A:62-315 [390174] Other proteins in same PDB: d7jiwa1 automated match to d2fe8a2 complexed with cl, mes, vby, zn

   16. Domain for 7jn2:

       • Domain d7jn2a2: 7jn2 A:62-315 [390276] Other proteins in same PDB: d7jn2a1 automated match to d2fe8a2 complexed with act, cl, unx, y41, zn

   17. Domains for 7jrn:

       1. Domain d7jrna2: 7jrn A:62-315 [390295] Other proteins in same PDB: d7jrna1, d7jrnj1 automated match to d2fe8a2 complexed with so4, ttt, zn

       2. Domain d7jrnj2: 7jrn J:62-315 [390299] Other proteins in same PDB: d7jrna1, d7jrnj1 automated match to d2fe8a2 complexed with so4, ttt, zn

   18. Domain for 7koj:

       • Domain d7koja2: 7koj A:62-314 [395000] Other proteins in same PDB: d7koja1 automated match to d4m0wa2 complexed with act, cl, mes, unx, y94, zn; mutant

   19. Domain for 7kok:

       • Domain d7koka2: 7kok A:62-314 [395075] Other proteins in same PDB: d7koka1 automated match to d4m0wa2 complexed with act, cl, mes, unx, y96, zn; mutant

   20. Domain for 7kol:

       • Domain d7kola2: 7kol A:62-314 [394939] Other proteins in same PDB: d7kola1 automated match to d2fe8a2 complexed with cl, mes, y96, zn

   21. Domain for 7krx:

       • Domain d7krxa2: 7krx A:62-314 [395126] Other proteins in same PDB: d7krxa1 automated match to d4m0wa2 complexed with act, cl, unx, y41, zn; mutant

More info for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain

Timeline for Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain:

• Protein automated matches from d.3.1.23: Papain-like viral protease catalytic domain first appeared in SCOPe 2.06