Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2147804Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2147805Superfamily c.97.1: Cytidine deaminase-like [53927] (7 families) (S)
    contains extra C-terminal strand 5, order 21345
  5. 2148016Family c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains [310632] (5 protein domains)
    strand 5 is parallel to strand 4
    Pfam PF08210; Pfam PF05240
  6. 2148040Protein automated matches [310855] (3 species)
    not a true protein

Species:

  1. 2148041Human (Homo sapiens) [TaxId:9606] [311219] (18 PDB entries)
    1. Domain for 2kbo:
    2. Domain for 2nbq:
    3. Domain for 3iqs:
    4. Domains for 3ir2:
      1. 2148048Domain d3ir2a_: 3ir2 A: [305584]
        automated match to d4xxoa_
        complexed with cl, mg, zn
      2. 2148049Domain d3ir2b_: 3ir2 B: [305585]
        automated match to d4xxoa_
        complexed with cl, mg, zn
    5. Domains for 3v4j:
      1. 2148051Domain d3v4ja_: 3v4j A: [306675]
        automated match to d4xxoa_
        complexed with pqr, zn
      2. 2148052Domain d3v4jb_: 3v4j B: [306676]
        automated match to d4xxoa_
        complexed with pqr, zn
    6. Domains for 3v4k:
      1. 2148042Domain d3v4ka_: 3v4k A: [306677]
        automated match to d4xxoa_
        complexed with cl, mg, zn
      2. 2148043Domain d3v4kb_: 3v4k B: [306678]
        automated match to d4xxoa_
        complexed with cl, mg, zn
    7. Domains for 3vm8:
      1. 2148059Domain d3vm8a_: 3vm8 A: [306681]
        automated match to d4ioua_
        complexed with zn
      2. 2148060Domain d3vm8b_: 3vm8 B: [306682]
        automated match to d4ioua_
        complexed with zn
    8. Domains for 3vow:
      1. 2148053Domain d3vowa_: 3vow A: [306685]
        automated match to d4ioua_
        complexed with cl, zn
      2. 2148054Domain d3vowb_: 3vow B: [306686]
        automated match to d4ioua_
        complexed with cl, zn
    9. Domains for 3wus:
      1. 2298640Domain d3wusb_: 3wus B: [341941]
        automated match to d2kema_
        complexed with zn
      2. 2298643Domain d3wusa_: 3wus A: [341944]
        automated match to d2kema_
        complexed with zn
    10. Domains for 4rov:
      1. 2148045Domain d4rova_: 4rov A: [309484]
        automated match to d2nytb_
        complexed with zn
      2. 2148046Domain d4rovb_: 4rov B: [309485]
        automated match to d2nytb_
        complexed with zn
    11. Domain for 4row:
    12. Domains for 5cqd:
      1. 2148057Domain d5cqda_: 5cqd A: [310347]
        Other proteins in same PDB: d5cqdc2
        automated match to d4xxoa_
        complexed with gol, zn
      2. 2148058Domain d5cqdc1: 5cqd C:188-378 [310348]
        Other proteins in same PDB: d5cqdc2
        automated match to d4xxoa_
        complexed with gol, zn
    13. Domain for 5cqh:
    14. Domain for 5cqi:
    15. Domain for 5cqk:
    16. Domains for 5hx4:
      1. 2274208Domain d5hx4a_: 5hx4 A: [317509]
        automated match to d2kema_
      2. 2274211Domain d5hx4b_: 5hx4 B: [317512]
        automated match to d2kema_
    17. Domains for 5hx5:
      1. 2274205Domain d5hx5a_: 5hx5 A: [317506]
        automated match to d2kema_
        complexed with zn
      2. 2274305Domain d5hx5b_: 5hx5 B: [317606]
        automated match to d2kema_
        complexed with zn
    18. Domains for 5tkm:
      1. 2292129Domain d5tkma_: 5tkm A: [335430]
        automated match to d3vm8a_
        complexed with zn
      2. 2292265Domain d5tkmb_: 5tkm B: [335566]
        automated match to d3vm8a_
        complexed with zn
  2. 2148062Mouse (Mus musculus) [TaxId:10090] [311244] (1 PDB entry)
  3. 2277803Macaca mulatta [TaxId:9544] [321104] (2 PDB entries)
    1. Domains for 5k81:
      1. 2277804Domain d5k81f_: 5k81 F: [321105]
        automated match to d3vm8a_
        complexed with zn
      2. 2277811Domain d5k81a_: 5k81 A: [321112]
        automated match to d3vm8a_
        complexed with zn
      3. 2277816Domain d5k81c_: 5k81 C: [321117]
        automated match to d3vm8a_
        complexed with zn
      4. 2277861Domain d5k81b_: 5k81 B: [321162]
        automated match to d3vm8a_
        complexed with zn
      5. 2277892Domain d5k81d_: 5k81 D: [321193]
        automated match to d3vm8a_
        complexed with zn
      6. 2277908Domain d5k81e_: 5k81 E: [321209]
        automated match to d3vm8a_
        complexed with zn
    2. Domains for 5k82:
      1. 2277806Domain d5k82b_: 5k82 B: [321107]
        automated match to d3vm8a_
        complexed with zn
      2. 2277810Domain d5k82a_: 5k82 A: [321111]
        automated match to d3vm8a_
        complexed with zn
      3. 2277814Domain d5k82c_: 5k82 C: [321115]
        automated match to d3vm8a_
        complexed with zn
      4. 2277836Domain d5k82d_: 5k82 D: [321137]
        automated match to d3vm8a_
        complexed with zn

More info for Protein automated matches from c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains

Timeline for Protein automated matches from c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains:

  • Protein automated matches from c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains is new in SCOPe 2.06-stable