Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2489936Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2489937Superfamily c.97.1: Cytidine deaminase-like [53927] (7 families) (S)
    contains extra C-terminal strand 5, order 21345
  5. 2490148Family c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains [310632] (5 protein domains)
    strand 5 is parallel to strand 4
    Pfam PF08210; Pfam PF05240
  6. 2490189Protein automated matches [310855] (2 species)
    not a true protein

Species:

  1. 2490190Human (Homo sapiens) [TaxId:9606] [311219] (17 PDB entries)
    1. Domain for 2kbo:
    2. Domain for 2nbq:
    3. Domain for 3iqs:
    4. Domains for 3ir2:
      1. 2490195Domain d3ir2a_: 3ir2 A: [305584]
        automated match to d4xxoa_
        complexed with cl, mg, zn
      2. 2490196Domain d3ir2b_: 3ir2 B: [305585]
        automated match to d4xxoa_
        complexed with cl, mg, zn
    5. Domains for 3v4j:
      1. 2490204Domain d3v4ja_: 3v4j A: [306675]
        automated match to d4xxoa_
        complexed with pqr, zn
      2. 2490205Domain d3v4jb_: 3v4j B: [306676]
        automated match to d4xxoa_
        complexed with pqr, zn
    6. Domains for 3v4k:
      1. 2490191Domain d3v4ka_: 3v4k A: [306677]
        automated match to d4xxoa_
        complexed with cl, mg, zn
      2. 2490192Domain d3v4kb_: 3v4k B: [306678]
        automated match to d4xxoa_
        complexed with cl, mg, zn
    7. Domains for 3vm8:
      1. 2490210Domain d3vm8a_: 3vm8 A: [306681]
        automated match to d4ioua_
        complexed with zn
      2. 2490211Domain d3vm8b_: 3vm8 B: [306682]
        automated match to d4ioua_
        complexed with zn
    8. Domains for 3vow:
      1. 2490208Domain d3vowa_: 3vow A: [306685]
        automated match to d4ioua_
        complexed with cl, zn
      2. 2490209Domain d3vowb_: 3vow B: [306686]
        automated match to d4ioua_
        complexed with cl, zn
    9. Domains for 4rov:
      1. 2490198Domain d4rova_: 4rov A: [309484]
        automated match to d2nytb_
        complexed with zn
      2. 2490199Domain d4rovb_: 4rov B: [309485]
        automated match to d2nytb_
        complexed with zn
    10. Domain for 4row:
    11. Domains for 5cqd:
      1. 2490206Domain d5cqda_: 5cqd A: [310347]
        Other proteins in same PDB: d5cqdc2
        automated match to d4xxoa_
        complexed with gol, zn
      2. 2490207Domain d5cqdc1: 5cqd C:188-378 [310348]
        Other proteins in same PDB: d5cqdc2
        automated match to d4xxoa_
        complexed with gol, zn
    12. Domain for 5cqh:
    13. Domain for 5cqi:
    14. Domain for 5cqk:
    15. Domains for 5sxg:
      1. 3047399Domain d5sxga1: 5sxg A:191-378 [347461]
        Other proteins in same PDB: d5sxga2, d5sxgb2
        automated match to d5cqda_
        complexed with imd, pdo, zn
      2. 3047519Domain d5sxgb1: 5sxg B:191-378 [347581]
        Other proteins in same PDB: d5sxga2, d5sxgb2
        automated match to d5cqda_
        complexed with imd, pdo, zn
    16. Domains for 5sxh:
      1. 3047421Domain d5sxhb1: 5sxh B:191-378 [347483]
        Other proteins in same PDB: d5sxha2, d5sxhb2
        automated match to d5cqda_
        complexed with edo, zn
      2. 3047573Domain d5sxha1: 5sxh A:191-378 [347635]
        Other proteins in same PDB: d5sxha2, d5sxhb2
        automated match to d5cqda_
        complexed with edo, zn
    17. Domains for 5tkm:
      1. 2490201Domain d5tkma_: 5tkm A: [335430]
        automated match to d3vm8a_
        complexed with zn
      2. 2490202Domain d5tkmb_: 5tkm B: [335566]
        automated match to d3vm8a_
        complexed with zn
  2. 2490214Mouse (Mus musculus) [TaxId:10090] [311244] (1 PDB entry)

More info for Protein automated matches from c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains

Timeline for Protein automated matches from c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains:

  • Protein automated matches from c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains first appeared in SCOPe 2.06