Lineage for Protein: Papain-like protease PLpro, catalytic domain

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2926589Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2926590Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2927545Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 proteins)
    C-terminal part of Pfam PF08715
  6. 2927546Protein Papain-like protease PLpro, catalytic domain [310795] (4 species)

Species:

  1. 2927547Human betacoronavirus 2c EMC/2012 [TaxId:1235996] [311055] (7 PDB entries)
    1. Domain for 4p16:
    2. Domain for 4pt5:
    3. Domain for 4rna:
    4. Domain for 5v69:
    5. Domain for 5v6a:
    6. Domains for 5w8t:
      1. 2927555Domain d5w8ta2: 5w8t A:62-320 [339684]
        Other proteins in same PDB: d5w8ta1, d5w8tb_, d5w8tc1, d5w8td_
        automated match to d4pt5a2
        complexed with aye, mpd, zn
      2. 2927556Domain d5w8tc2: 5w8t C:62-320 [339686]
        Other proteins in same PDB: d5w8ta1, d5w8tb_, d5w8tc1, d5w8td_
        automated match to d4pt5a2
        complexed with aye, mpd, zn
    7. Domains for 5w8u:
      1. 2927549Domain d5w8ua2: 5w8u A:62-320 [339689]
        Other proteins in same PDB: d5w8ua1, d5w8ub1, d5w8ub2, d5w8uc1, d5w8ud1, d5w8ud2
        automated match to d4pt5a2
        complexed with aye, mpd, zn
      2. 2927550Domain d5w8uc2: 5w8u C:62-320 [339682]
        Other proteins in same PDB: d5w8ua1, d5w8ub1, d5w8ub2, d5w8uc1, d5w8ud1, d5w8ud2
        automated match to d4pt5a2
        complexed with aye, mpd, zn
  2. 2927557Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] [311427] (3 PDB entries)
    1. Domain for 4rez:
    2. Domain for 4rf0:
    3. Domain for 4rf1:
  3. 2927561SARS coronavirus [TaxId:227859] [311054] (1 PDB entry)
  4. 2927565Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [383236] (1 PDB entry)

More info for Protein Papain-like protease PLpro, catalytic domain from d.3.1.23: Papain-like viral protease catalytic domain

Timeline for Protein Papain-like protease PLpro, catalytic domain from d.3.1.23: Papain-like viral protease catalytic domain:

  • Protein Papain-like protease PLpro, catalytic domain from d.3.1.23: Papain-like viral protease catalytic domain first appeared in SCOPe 2.06
  • Protein Papain-like protease PLpro, catalytic domain from d.3.1.23: Papain-like viral protease catalytic domain appears in SCOPe 2.07