Lineage for Protein: APOBEC3G (ARCD)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2918481Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2918482Superfamily c.97.1: Cytidine deaminase-like [53927] (7 families) (S)
    contains extra C-terminal strand 5, order 21345
  5. 2918718Family c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains [310632] (5 proteins)
    strand 5 is parallel to strand 4
    Pfam PF08210; Pfam PF05240
  6. 2918744Protein APOBEC3G (ARCD) [310757] (2 species)

Species:

  1. 2918745Human (Homo sapiens) [TaxId:9606] [311012] (4 PDB entries)
    1. Domain for 2jyw:
    2. Domain for 2kem:
    3. Domains for 6wma:
      1. 2918746Domain d6wmaa1: 6wma A:24-194 [397884]
        Other proteins in same PDB: d6wmaa3
        automated match to d5hx4a_
        protein/DNA complex; complexed with cl, gol, zn
      2. 2918747Domain d6wmaa2: 6wma A:195-382 [397885]
        Other proteins in same PDB: d6wmaa3
        automated match to d5hx4a_
        protein/DNA complex; complexed with cl, gol, zn
    4. Domains for 6wmb:
      1. 2918748Domain d6wmba1: 6wmb A:24-194 [397913]
        Other proteins in same PDB: d6wmba3
        automated match to d5hx4a_
        protein/DNA complex; complexed with zn
      2. 2918749Domain d6wmba2: 6wmb A:195-382 [397914]
        Other proteins in same PDB: d6wmba3
        automated match to d5hx4a_
        protein/DNA complex; complexed with zn
  2. 2918752Rhesus monkey (Macaca mulatta) [TaxId:9544] [346337] (6 PDB entries)
    1. Domains for 5k81:
      1. 2918753Domain d5k81a_: 5k81 A: [321112]
        automated match to d3vm8a_
        complexed with zn
      2. 2918754Domain d5k81b_: 5k81 B: [321162]
        automated match to d3vm8a_
        complexed with zn
      3. 2918755Domain d5k81c_: 5k81 C: [321117]
        automated match to d3vm8a_
        complexed with zn
      4. 2918756Domain d5k81d_: 5k81 D: [321193]
        automated match to d3vm8a_
        complexed with zn
      5. 2918757Domain d5k81e_: 5k81 E: [321209]
        automated match to d3vm8a_
        complexed with zn
      6. 2918758Domain d5k81f_: 5k81 F: [321105]
        automated match to d3vm8a_
        complexed with zn
    2. Domains for 5k82:
      1. 2918775Domain d5k82a_: 5k82 A: [321111]
        automated match to d3vm8a_
        complexed with zn
      2. 2918776Domain d5k82b_: 5k82 B: [321107]
        automated match to d3vm8a_
        complexed with zn
      3. 2918777Domain d5k82c_: 5k82 C: [321115]
        automated match to d3vm8a_
        complexed with zn
      4. 2918778Domain d5k82d_: 5k82 D: [321137]
        automated match to d3vm8a_
        complexed with zn
    3. Domains for 6p3x:
      1. 2918759Domain d6p3xa1: 6p3x A:4-195 [380456]
        automated match to d5k82a_
        complexed with zn
      2. 2918760Domain d6p3xa2: 6p3x A:196-383 [380457]
        automated match to d5k82a_
        complexed with zn
      3. 2918761Domain d6p3xb1: 6p3x B:4-195 [380507]
        automated match to d5k82a_
        complexed with zn
      4. 2918762Domain d6p3xb2: 6p3x B:196-383 [380508]
        automated match to d5k82a_
        complexed with zn
    4. Domains for 6p3y:
      1. 2918767Domain d6p3ya1: 6p3y A:4-195 [380449]
        automated match to d5k82a_
        complexed with zn
      2. 2918768Domain d6p3ya2: 6p3y A:196-383 [380450]
        automated match to d5k82a_
        complexed with zn
      3. 2918769Domain d6p3yb1: 6p3y B:4-195 [380444]
        automated match to d5k82a_
        complexed with zn
      4. 2918770Domain d6p3yb2: 6p3y B:196-383 [380445]
        automated match to d5k82a_
        complexed with zn
    5. Domains for 6p3z:
      1. 2918771Domain d6p3za1: 6p3z A:4-195 [380436]
        automated match to d5k82a_
        complexed with zn
      2. 2918772Domain d6p3za2: 6p3z A:196-383 [380437]
        automated match to d5k82a_
        complexed with zn
      3. 2918773Domain d6p3zb1: 6p3z B:4-195 [380472]
        automated match to d5k82a_
        complexed with zn
      4. 2918774Domain d6p3zb2: 6p3z B:196-383 [380473]
        automated match to d5k82a_
        complexed with zn
    6. Domains for 6p40:
      1. 2918763Domain d6p40a1: 6p40 A:7-195 [380440]
        automated match to d5k82a_
        complexed with zn
      2. 2918764Domain d6p40a2: 6p40 A:196-382 [380441]
        automated match to d5k82a_
        complexed with zn
      3. 2918765Domain d6p40b1: 6p40 B:7-195 [380438]
        automated match to d5k82a_
        complexed with zn
      4. 2918766Domain d6p40b2: 6p40 B:196-382 [380439]
        automated match to d5k82a_
        complexed with zn

More info for Protein APOBEC3G (ARCD) from c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains

Timeline for Protein APOBEC3G (ARCD) from c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains:

  • Protein APOBEC3G (ARCD) from c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains first appeared in SCOPe 2.06
  • Protein APOBEC3G (ARCD) from c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains appears in SCOPe 2.07