SCOPe 2.06: Family d.3.1.23: Papain-like viral protease catalytic domain

Lineage for Family d.3.1.23: Papain-like viral protease catalytic domain

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.3: Cysteine proteinases [54000] (1 superfamily)
   consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

4. Superfamily d.3.1: Cysteine proteinases [54001] (24 families)
   the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

5. Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 proteins)
   C-terminal part of Pfam PF08715

Proteins:

1. Papain-like protease PLpro, catalytic domain [310795] (3 species)

   1. Species Human betacoronavirus 2c EMC/2012 [TaxId:1235996] [311055] (5 PDB entries)

   2. Species Human betacoronavirus 2c jordan-n3/2012 [TaxId:1306931] [311427] (5 PDB entries)

   3. Species SARS coronavirus [TaxId:227859] [311054] (1 PDB entry)

2. automated matches [310868] (5 species)
   not a true protein

   1. Species Betacoronavirus england 1 [TaxId:1263720] [311420] (1 PDB entry)

   2. Species Human coronavirus emc [TaxId:1263720] [311464] (1 PDB entry)

   3. Species Human sars coronavirus [TaxId:227859] [333837] (1 PDB entry)

   4. Species SARS coronavirus [TaxId:227859] [311282] (4 PDB entries)

   5. Species Sars coronavirus [TaxId:228330] [311412] (2 PDB entries)

More info for Family d.3.1.23: Papain-like viral protease catalytic domain

Timeline for Family d.3.1.23: Papain-like viral protease catalytic domain:

• Family d.3.1.23: Papain-like viral protease catalytic domain is new in SCOPe 2.06-stable
  
• Family d.3.1.23: Papain-like viral protease catalytic domain appears in SCOPe 2.07
  
• Family d.3.1.23: Papain-like viral protease catalytic domain appears in the current release, SCOPe 2.08