SCOPe 2.07: Domain d5e6zd2: 5e6z D:227-622

Lineage for d5e6zd2 (5e6z D:227-622)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein automated matches [190099] (33 species)
   not a true protein

7. Species Escherichia coli [TaxId:331111] [311496] (3 PDB entries)

8. Domain d5e6zd2: 5e6z D:227-622 [310467]
   Other proteins in same PDB: d5e6za1, d5e6za3, d5e6zb1, d5e6zb3, d5e6zc1, d5e6zc3, d5e6zd1, d5e6zd3
   automated match to d1m7xa3
   complexed with bcd, gol

Details for d5e6zd2

PDB Entry: 5e6z, 1.88 Å

PDB Description: crystal structure of ecoli branching enzyme with beta cyclodextrin

PDB Compounds: (D:) 1,4-alpha-glucan branching enzyme GlgB

SCOPe Domain Sequences for d5e6zd2:

Sequence, based on SEQRES records:

>d5e6zd2 c.1.8.1 (D:227-622) automated matches {Escherichia coli [TaxId: 331111]}
vvqteerkkanqfdapisiyevhlgswrrhtdnnfwlsyreladqlvpyakwmgfthlel
lpinehpfdgswgyqptglyaptrrfgtrddfryfidaahaaglnvildwvpghfptddf
alaefdgtnlyehsdpregyhqdwntliynygrrevsnflvgnalywierfgidalrvda
vasmiyrdysrkegewipnefggrenleaieflrntnrilgeqvsgavtmaeestdfpgv
srpqdmgglgfwykwnlgwmhdtldymkldpvyrqyhhdkltfgilynytenfvlplshd
evvhgkksildrmpgdawqkfanlrayygwmwafpgkkllfmgnefaqgrewnhdasldw
hlleggdnwhhgvqrlvrdlnltyrhhkamheldfd

Sequence, based on observed residues (ATOM records):

>d5e6zd2 c.1.8.1 (D:227-622) automated matches {Escherichia coli [TaxId: 331111]}
vvqteerkkanqfdapisiyevhlgswrrhtdnnfwlsyreladqlvpyakwmgfthlel
lpinehpfdgswgyqptglyaptrrfgtrddfryfidaahaaglnvildwvpghfptddf
alaefdgtnlyehstliynygrrevsnflvgnalywierfgidalrvdavasmiyrdgre
nleaieflrntnrilgeqvsgavtmaeestdfpgvsrpqdmgglgfwykwnlgwmhdtld
ymkldpvyrqyhhdkltfgilynytenfvlplshdevvhgkksildrmpgdawqkfanlr
ayygwmwafpgkkllfmgnefaqgrewnhdasldwhlleggdnwhhgvqrlvrdlnltyr
hhkamheldfd

Timeline for d5e6zd2:

• d5e6zd2 first appeared in SCOPe 2.06
  
• d5e6zd2 appears in the current release, SCOPe 2.08