SCOPe 2.06: Domain d5dyfa4: 5dyf A:540-867

Lineage for d5dyfa4 (5dyf A:540-867)

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (25 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.1: ARM repeat [48371] (26 families)

5. Family a.118.1.27: Aminopeptidase N (APN) C-terminal-like [254179] (1 protein)
   PubMed 17876832; C-terminal part of Pfam PF11940
   this is a repeat family; one repeat unit is 4pvb A:690-721 found in domain

6. Protein Aminopeptidase N (APN) C-terminal domain [254402] (1 species)

7. Species Neisseria meningitidis [TaxId:122586] [254838] (9 PDB entries)

8. Domain d5dyfa4: 5dyf A:540-867 [310431]
   Other proteins in same PDB: d5dyfa1, d5dyfa2, d5dyfa3
   automated match to d2gtqa4
   complexed with 5hr, gol, imd, so4, zn

Details for d5dyfa4

PDB Entry: 5dyf, 1.85 Å

PDB Description: the crystal structure of aminopeptidase n in complex with n-benzyl-1, 2-diaminoethylphosphonic acid

PDB Compounds: (A:) Aminopeptidase N

SCOPe Domain Sequences for d5dyfa4:

Sequence; same for both SEQRES and ATOM records:

>d5dyfa4 a.118.1.27 (A:540-867) Aminopeptidase N (APN) C-terminal domain {Neisseria meningitidis [TaxId: 122586]}
pysdddlllllahdsdaftrweaaqtlyrravaanlatlsdgvelpkhekllaavekvis
ddlldnafkalllgvpseaelwdgaenidplryhqarealldtlavhflpkwhelnrqaa
kqenqsyeyspeaagwrtlrnvcrafvlradpahietvaekygemaqnmthewgilsavn
gnesdtrnrllaqfadkfsddalvmdkyfalvgssrrsdtlqqvrtalqhpkfslenpnk
arsligsfsrnvphfhaedgsgyrfiadkvieidrfnpqvaarlvqafnlcnklephrkn
lvkqalqriraqeglskdvgeivgkild

Timeline for d5dyfa4:

• d5dyfa4 is new in SCOPe 2.06-stable
  
• d5dyfa4 appears in SCOPe 2.07
  
• d5dyfa4 appears in the current release, SCOPe 2.08