Lineage for d5cqdc1 (5cqd C:188-378)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2147804Fold c.97: Cytidine deaminase-like [53926] (2 superfamilies)
    core: alpha-beta(2)-(alpha-beta)2; 3 layers (a/b/a); mixed beta-sheet of 4 strands, order 2134; strand 1 is antiparallel to the rest
  4. 2147805Superfamily c.97.1: Cytidine deaminase-like [53927] (7 families) (S)
    contains extra C-terminal strand 5, order 21345
  5. 2148016Family c.97.1.6: apolipoprotein B messenger RNA-editing enzyme catalytic (APOBEC) cytidine deaminase domains [310632] (5 protein domains)
    strand 5 is parallel to strand 4
    Pfam PF08210; Pfam PF05240
  6. 2148040Protein automated matches [310855] (3 species)
    not a true protein
  7. 2148041Species Human (Homo sapiens) [TaxId:9606] [311219] (18 PDB entries)
  8. 2148058Domain d5cqdc1: 5cqd C:188-378 [310348]
    Other proteins in same PDB: d5cqdc2
    automated match to d4xxoa_
    complexed with gol, zn

Details for d5cqdc1

PDB Entry: 5cqd (more details), 2.08 Å

PDB Description: crystal structure of the cancer genomic dna mutator apobec3b
PDB Compounds: (C:) DNA dC->dU-editing enzyme APOBEC-3B

SCOPe Domain Sequences for d5cqdc1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5cqdc1 c.97.1.6 (C:188-378) automated matches {Human (Homo sapiens) [TaxId: 9606]}

SCOPe Domain Coordinates for d5cqdc1:

Click to download the PDB-style file with coordinates for d5cqdc1.
(The format of our PDB-style files is described here.)

Timeline for d5cqdc1:

  • d5cqdc1 is new in SCOPe 2.06-stable

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