SCOPe 2.08: Domain d1cvra2: 1cvr A:1-350

Lineage for d1cvra2 (1cvr A:1-350)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.17: Caspase-like [52128] (1 superfamily)
   3 layers, a/b/a; core: mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest

4. Superfamily c.17.1: Caspase-like [52129] (3 families)
   mature protein may be composed of two chains folded in a single domain

5. Family c.17.1.2: Gingipain R (RgpB), N-terminal domain [52137] (2 proteins)
   contains extra N-terminal alpha/beta subdomain
   automatically mapped to Pfam PF01364

6. Protein Gingipain R (RgpB), N-terminal domain [52138] (1 species)
   Arginine-specific cysteine proteinase

7. Species Porphyromonas gingivalis [TaxId:837] [52139] (1 PDB entry)

8. Domain d1cvra2: 1cvr A:1-350 [31006]
   Other proteins in same PDB: d1cvra1
   complexed with ca, h37, zn

Details for d1cvra2

PDB Entry: 1cvr, 2 Å

PDB Description: Crystal structure of the Arg specific cysteine proteinase gingipain R (RGPB)

PDB Compounds: (A:) gingipain r

SCOPe Domain Sequences for d1cvra2:

Sequence; same for both SEQRES and ATOM records:

>d1cvra2 c.17.1.2 (A:1-350) Gingipain R (RgpB), N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
ytpveekengrmivivakkyegdikdfvdwknqrglrtevkvaediaspvtanaiqqfvk
qeyekegndltyvllvgdhkdipakitpgiksdqvygqivgndhynevfigrfscesked
lktqidrtihyernittedkwlgqalciasaeggpsadngesdiqhenvianlltqygyt
kiikcydpgvtpkniidafnggislvnytghgsetawgtshfgtthvkqltnsnqlpfif
dvacvngdflfsmpcfaealmraqkdgkptgtvaiiastidqywappmrgqdemneilce
khpnnikrtfggvtmngmfamvekykkdgenmldtwtvfgdpsllvrtlv

Timeline for d1cvra2:

• d1cvra2 first appeared (with stable ids) in SCOP 1.55
  
• d1cvra2 appears in SCOPe 2.07