Lineage for d4o4ub4 (4o4u B:391-537)

  1. Root: SCOPe 2.06
  2. 2250849Class f: Membrane and cell surface proteins and peptides [56835] (59 folds)
  3. 2251383Fold f.4: Transmembrane beta-barrels [56924] (7 superfamilies)
    not a true fold, gathers together transmembrane barrels of different (n,S)
  4. 2251384Superfamily f.4.1: OMPA-like [56925] (5 families) (S)
    forms (8,10) barrel
  5. 2251452Family f.4.1.0: automated matches [191664] (1 protein)
    not a true family
  6. 2251453Protein automated matches [191257] (5 species)
    not a true protein
  7. 2251463Species Haemophilus parasuis [TaxId:738] [311404] (2 PDB entries)
  8. 2251467Domain d4o4ub4: 4o4u B:391-537 [307823]
    Other proteins in same PDB: d4o4ua1, d4o4ua3, d4o4ub1, d4o4ub3, d4o4uc1, d4o4uc3, d4o4ud1, d4o4ud3
    automated match to d3hola2
    complexed with gol; mutant

Details for d4o4ub4

PDB Entry: 4o4u (more details), 2.64 Å

PDB Description: crystal structure of the vaccine antigen transferrin binding protein b (tbpb) mutant trp-176-ala from haemophilus parasuis hp5
PDB Compounds: (B:) TbpB

SCOPe Domain Sequences for d4o4ub4:

Sequence, based on SEQRES records: (download)

>d4o4ub4 f.4.1.0 (B:391-537) automated matches {Haemophilus parasuis [TaxId: 738]}
atdkmpkdgnykyigtwdaqvskennywvatadddrkagyrtefdvdfgsknlsgklfdk
ngvnpvftvnakidgngftgeaktsdagfvldpgslrhdnvkfsdvavsggfygptaael
ggqfryqsdngsvgvgavfgakqqvkk

Sequence, based on observed residues (ATOM records): (download)

>d4o4ub4 f.4.1.0 (B:391-537) automated matches {Haemophilus parasuis [TaxId: 738]}
atdkmpkdgnykyigtwdaqvskennywvatadddrkagyrtefdvdfgsknlsgklfdk
ngvnpvftvnakidgngftgeaktsdagfvldpdnvkfsdvavsggfygptaaelggqfr
yqsdngsvgvgavfgakqqvkk

SCOPe Domain Coordinates for d4o4ub4:

Click to download the PDB-style file with coordinates for d4o4ub4.
(The format of our PDB-style files is described here.)

Timeline for d4o4ub4: